@cc7740

Genomes, molecular evolution. Often seen wielding camera. she/her. Find me at bsky.

 Cambridge, England
claudia-c-weber.github.io/
Joined March 2009
  • Tweets1.5K
  • Following544
  • Followers566
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Dr Claudia C. Weber retweeted
bioRxiv Genomics@biorxiv_genomic4 Nov 2024
Kudoa genomes from contaminated hosts reveal extensive gene order conservation and rapid sequence evolution biorxiv.org/cgi/content/shor… #biorxiv_genomic
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Dr Claudia C. Weber retweeted
bioRxiv@biorxivpreprint3 Jun 2024
Disentangling Cobionts and Contamination in Long-Read Genomic Data using Sequence Composition biorxiv.org/cgi/content/shor… #bioRxiv
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Our first forum starts soon! Check it out... + shoutout to our committee @CartneyAnn @timmybash001 @PalmadaMarc @Dr_Stoat @Felipe_SilvaE @samfrowe @drjuefish @jasonwilliamsNY @IgiehonOzede @cc7740, John, Jianguo, Taukondjo, Nicolette, Bouabid, + Olivia
Marcela Uliano-Silva@MahUliano28 Sep 2021
During #BG2021 we have 2 Fora on Justice, Equity Diversity and Inclusion organised by our @EBPgenome JEDI Committee. How this committee came to be? What genomics for all means? Check this small piece by @SadyePaez & I Genomics for all sangerinstitute.blog/2021/09… via @sangerinstitute
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Dr Claudia C. Weber retweeted
Goldman Group@EBIgoldman6 Jan 2021
Now out in Systematic Biology (academic.oup.com/sysbio/arti…), for those of you who might like to (e.g.) estimate dN/dS using dinosaur amino acid sequence data (there are other applications too). xitter.cf/EBIgoldman/status/1183…
Goldman Group@EBIgoldman14 Oct 2019
Who knew you could estimate dN, dS and predict ancestral protein structures from amino acid sequences alone? Well done @cc7740 @uperron3 @DearbhaileCasey @zihengyang for this piece of work: xitter.cf/biorxiv_evobio/status/…
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Dr Claudia C. Weber retweeted
Goldman Group@EBIgoldman14 Oct 2019
Who knew you could estimate dN, dS and predict ancestral protein structures from amino acid sequences alone? Well done @cc7740 @uperron3 @DearbhaileCasey @zihengyang for this piece of work: xitter.cf/biorxiv_evobio/status/…
bioRxiv Evobio@biorxiv_evobio14 Oct 2019
Ambiguity coding allows accurate inference of evolutionary parameters from alignments in an aggregated state-space biorxiv.org/cgi/content/shor… #biorxiv_evobio
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Dr Claudia C. Weber retweeted
bioRxiv@biorxivpreprint14 Oct 2019
Ambiguity coding allows accurate inference of evolutionary parameters from alignments in an aggregated state-space biorxiv.org/cgi/content/shor… #bioRxiv
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Dr Claudia C. Weber retweeted
Adam Siepel@asiepel28 Jun 2019
Our latest paper, on the estimation of allele-specific fitness effects of protein-coding mutations: genome.cshlp.org/content/ear… Paywall, but bioRxiv version is here: biorxiv.org/content/10.1101/…
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Dr Claudia C. Weber retweeted
Dr Claudia C. Weber@cc774021 Jan 2019
Latest paper: Physicochemical amino acid properties better describe substitution rates in large populations doi.org/10.1093/molbev/msz00… (previously on biorxiv)

Physicochemical Amino Acid Properties Better Describe Substitution Rates in Large Populations

Abstract. Substitutions between chemically distant amino acids are known to occur less frequently than those between more similar amino acids. This knowled

academic.oup.com
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Dr Claudia C. Weber retweeted
bioRxiv@biorxivpreprint30 Nov 2018
Polymorphism-aware species trees with advanced mutation models, bootstrap and rate heterogeneity biorxiv.org/cgi/content/shor… #bioRxiv
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Dr Claudia C. Weber retweeted
bioRxiv@biorxivpreprint3 Aug 2018
Physicochemical amino acid properties better describe substitution rates in large populations biorxiv.org/cgi/content/shor… #bioRxiv
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Dr Claudia C. Weber retweeted
Bloom Lab
@jbloom_lab17 Apr 2018
New work by Sarah Hilton examining how estimates of viral divergence times are deepened by using phylogenetic models with site-specific amino-acid preferences, from deep mutational scanning or inferred from natural sequences via approach of @bayesiancook: doi.org/10.1101/302703
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Dr Claudia C. Weber retweeted
Adam Eyre-Walker@AdamEyreWalker10 Apr 2018
I thought it might kill me; the longest paper I've ever written is published - Large scale variation in the rate of germ-line de novo mutation, base composition, divergence and diversity - journals.plos.org/plosgeneti… with almost all data and scripts available at 10.5061/dryad.935vc.
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MBE latest: Alignment modulates ancestral sequence reconstruction accuracy dlvr.it/QNFZ1v

Alignment Modulates Ancestral Sequence Reconstruction Accuracy

Abstract. Accurate reconstruction of ancestral states is a critical evolutionary analysis when studying ancient proteins and comparing biochemical properti

academic.oup.com
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Dr Claudia C. Weber retweeted
bioRxiv@biorxivpreprint1 Feb 2018
Germline DNA replication timing shapes mammalian genome composition biorxiv.org/cgi/content/shor… #bioRxiv
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Dr Claudia C. Weber retweeted
bioRxiv@biorxivpreprint12 Jan 2018
Accurate detection of convergent substitutions biorxiv.org/cgi/content/shor… #bioRxiv
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MBE latest: Unbiased estimate of synonymous and non-synonymous substitution rates with non-stationary base composition dlvr.it/Q4d9xZ
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Dr Claudia C. Weber retweeted
Joshua B. Plotkin
@jplotkin6 Nov 2017
Reduced mutation rate in exons due to differential mismatch repair. #evolvability nature.com/ng/journal/vaop/n…
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Dr Claudia C. Weber retweeted
Paul Gardner@ppgardne15 Sep 2017
ucbioinformatics.org/opportu… I'm hiring! 2 Postdocs & 2 PhDs. To work on some exciting projects with a great team - collaborations with ... 1/n
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Dr Claudia C. Weber retweeted
paleovirology@paleovirology128 Jul 2017
How to tame an endogenous retrovirus: HERVH and the evolution of human pluripotency. dlvr.it/PZ6h1z
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Dr Claudia C. Weber retweeted
David M. McCandlish@TheDMMcC27 Jun 2017
New paper with Arlin Stoltzfus online now at MBE! Mutational biases influence parallel adaptation doi.org/10.1093/molbev/msx18…
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