The Cancer Systems Biology Lab at Stanford, led by PI Sylvia Plevritis, is working to improve early detection and treatment strategies for individual patients.
Joined July 2019
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Stanford Plevritis Lab retweeted
Wendy Yang in the lab reviewed the existing ML methods (prediction & interpretation) for predicting 3D genome features using DNA sequences. This will be in a Special Issue @JMolBiol on AI/ML for mol bio edited by @james_y_zou @PlevritisLab @Hongzhe_K_Lee. sciencedirect.com/science/ar…
We're excited to share the final version of the CELESTA paper - a new method to identify cell types in multiplexed imaging!
CELESTA is available on github: github.com/plevritis-lab/CEL…
CELESTA from the @PlevritisLab is an unsupervised cell type identification method for multiplexed in situ imaging. It identifies cell types based on the expression profiles of cells and their spatial information.
nature.com/articles/s41592-0…
This work was spearheaded by Dr. Weiruo Zhang, along with @irenoplasm @RetickerFlynn @GoodZinaida and advised by @Qle_stanford @askyperson @JohnSunwooMD @GarryPNolan
Stanford Plevritis Lab retweeted
Tumors spread to lymph nodes before they metastasize to distant tissues, but for over a century scientists have debated whether this matters. It does. Check out our paper online now @CellCellPress @CellPressNews
cell.com/cell/fulltext/S0092…
1/15
Cellular crosstalk is fundamental to tissue biology. We are very excited to share our novel computational method - REMI - for reconstructing cell-cell communication from omics data! Read the article here: science.org/doi/10.1126/scia…
This work was spearheaded by the phenomenal @aliceomics as her graduate work in @StanfordDBDS and @stanfordbmi...
...but this work could not be possible without our interdisciplinary team at @StanfordMed: Yuanyuan Li, @irenoplasm, Michael Ozawa, @christineyyeh, @aechiou, Winston Trope, Jonathan Taylor, Joseph Shrager, @PlevritisLab
Stanford Plevritis Lab retweeted
What a great panel with these rockstars highlighting the importance of mentorship, diversity, and team science!! #WiDS2022 Data Science in Healthcare: Opportunities & Challenges @PlevritisLab @tanveersyedama1 @JYazdanyMD
Stanford Plevritis Lab retweeted
Excited to hosting my mentor Dr Sylvia Plevritis from @PlevritisLab @StanfordDBDS at this week's Cancer Prevention & Control Grand Rounds @MDAndersonNews. Join us to learn from a renowned expert how simulation models can offer insights on cancer biology & outcomes. Can't wait!
Stanford Plevritis Lab retweeted
New results from the @PlevritisLab now available in "Identification of cell types in multiplexed in situ images by combining protein expression and spatial information using CELESTA reveals novel spatial biology!" #CancerResearch #DataScience biorxiv.org/content/10.1101/…
We're excited to announce CELESTA, an algorithm that identifies cell types in multiplexed images!
Read the preprint: biorxiv.org/content/10.1101/…
Using CELESTA, we ID'd novel tissue morphology specific to lymph node metastasis in head and neck cancers.
This project was pioneered by Dr. Weiruo Zhang + support from @irenoplasm @RetickerFlynn @GarryPNolan @askyperson @Qle_stanford @JohnSunwooMD
biorxiv.org/content/10.1101/…
Supported by @StanfordDBDS @stanfordcbio @StanfordPath
@StanfordRad @StanfordCancer @NCIResearchCtr - please like and RT!
Stanford Plevritis Lab retweeted
The new CCAIM Seminar Series, bringing you the world leaders in #AI and #ML for healthcare, kicks off on 10 Feb 2021. Each free online seminar is followed by a live Q&A with our distinguished speaker. Find out more, and sign up bit.ly/2KwIWmc
Announcing our newest work on spatial fibroblast heterogeneity and #glycosylation, out now in @CR_AACR and led by Dr. Gina Bouchard @Gina78593734!
cancerres.aacrjournals.org/c…
Stanford Plevritis Lab retweeted
Are you a cancer researcher and interested in an editorial career? We have a job opening for 2022.
If you have experience in pre-clinical or clinical CANCER RESEARCH we'd love to hear from you!
go.nature.com/3dVKYro
@katieridd for questions!
#CancerResearch @NatResCancer
Stanford Plevritis Lab retweeted
Please RT: faculty position at Stanford! PhD, MD, MD/PhD candidates in the broadly-defined fields of pediatric cancer or stem cell transplant, laboratory and/or computational research programs welcome. Amazing environment! Feel free to contact me + check: app.smartsheet.com/b/form/ac…
Stanford Plevritis Lab retweeted
Excellent article on incorporating pathology and radiology within the medical school curriculum: news.doximity.com/entries/21…
cc @kmirza @HermelinDaniela @AustinMcHenry @MichaelPathMag @DrFNA @CArnold_GI @JMGardnerMD @Sara_Jiang @smlungpathguy
#CaseforAClerkship