Open data linkage, visualization and sharing for genomic epidemiology and phylogeography @thecgps @bdi_oxford Funded by Wellcome & Li Ka Shing foundation.
Joined May 2015
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Microreact retweeted
great to see @myMicroreact being utilised to interpret epi-linked sequence data @NorwichResearch, @NNUH, @NHSuk, @CovidGenomicsUK, and @PHE_uk
Since COVID-19 hit the UK in March, we've been at the forefront of genomic sequencing – sequencing over 18,000 samples.
Our new photo essay explores the collective effort of the Quadram, @NorwichResearch, @NNUH, @NHSuk, @CovidGenomicsUK, and @PHE_uk: ow.ly/vVBx50E95GE
Microreact retweeted
Excited to share 1st preprint from our lab! Genomic analysis of clinical Campylobacter strains from Chile led by Veronica Bravo tinyurl.com/y7wr4fsf Great collaboration with @narjol1 and Lorena Porte, Thomas Weitzel @Clinicaalemana! @MyMicroreact link microreact.org/project/VbEQs…
Genomic analysis of the diversity, antimicrobial resistance and virulence potential of Campylobacter jejuni and Campylobacter coli strains from a private health care center in Central Chile biorxiv.org/cgi/content/shor… #bioRxiv
Microreact retweeted
UPDATE: 22,218 SARS-CoV-2 @CovidGenomicsUK seen here within the global tree (n=33,904). Much improved tree viewer in @MyMicroreact along with global (pangolin) lineage distribution. Mammoth effort from across the UK sequencing and analysis centres microreact.org/project/cogco…
Microreact retweeted
SeqCOVID Spain @MyMicroreact podemos ver la distribución de muestras y linajes en el tiempo y el espacio de los genomas generados en el consorcio.
microreact.org/project/SiIqq…
seqcovid.csic.es/microreact/
Brought to You by Your Friendly Neighborhood @GaloGoig with help from @leosanbu
Microreact retweeted
Our trees are on @MyMicroreact for you to play with:
microreact.org/project/Campy…
microreact.org/project/Campy…
Microreact retweeted
10k #SARS_COV_2 genomes- incredible work by an incredible, well supported scientific collaboration cogconsortium.uk/about/, and rapid data sharing of course. Analysis of the UK strains: microreact.org/project/COGco… @MyMicroreact
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Microreact retweeted
And if you are interested in exploring the current analysis of worldwide lineages circulating in the UK, here is some analysis of ~9000 UK genomes divided into lineages via @TheCGPS fantastic @MyMicroreact website:
microreact.org/project/COGco…
Microreact retweeted
An example of the kind of detailed epidemiology needed to guide control measures in #ncov outbreaks – at Boston, MA
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Microreact retweeted
#GA4GHPlenary2019 really interesting talk from Bronwyn MacInnis on Public Health Genomics, showing @MyMicroreact for 2014 Ebola outbreak
Microreact retweeted
And the students used @MyMicroreact to visualise the Haiti cholera outbreak.
Microreact retweeted
Join us on Sunday for this! We'll be showing how we've used @MyMicroreact to track how a highly resistant superbug, Klebsiella ST258, has spread from country to country during the last 20 years. It's a great example of how nowhere is immune to the threat of antibiotic resistance.
Our team @TheCGPS has developed a tool @MyMicroreact that helps track spread of antibiotic resistant bacteria around the world.
Come to the Guildhall in Cambridge this Sunday (12-4pm) to try it out, take part in our Microreact Challenge and learn about antibiotic resistance!
Microreact retweeted
We’re excited to be at Cambridge Science Festival on Sunday! Come and see how we track the spread of antibiotic resistance using @MyMicroreact and take part in our Microreact Challenge #CamSciFest #WGCengage
Microreact retweeted
Our team @TheCGPS has developed a tool @MyMicroreact that helps track spread of antibiotic resistant bacteria around the world.
Come to the Guildhall in Cambridge this Sunday (12-4pm) to try it out, take part in our Microreact Challenge and learn about antibiotic resistance!
Microreact retweeted
We had a great time at the Wellcome Genome Campus Open Saturday event today exploring the spread of #AntibioticResistance using @MyMicroreact! Thanks to everyone for coming and to @WGCengage #WAAW18 #StopAntibioticResistance @rich_goater @nwheeler443 @sophia_david3
Microreact retweeted
Tracing the origin and spread of antibiotic resistance using Microreact.
#AMRAfrica2018
@sangerinstitute @EsteeTorok @francesc_cic @bfgbeth @ACSCevents @Cambridge_Uni @crewdson_adam @ewan_harrison
Microreact retweeted
David Aanensen showing and demoing Microreact(@MyMicroreact )! It keeps getting better and better!#eccmid2018
Microreact retweeted
@MyMicroreact link to Strep suis trees discussed in my #Microbio2018 talk this afternoon: microreact.org/project/Pasco…
Microreact retweeted
Hoy represento al @TheCGPS, o Centro de Vigilancia Genómica de Patógenos en Español! Super feliz de poder mostrar nuestras herramientas @MyMicroreact y WGSA a los expertos en RAM de las Américas.
Microreact retweeted
Happy to give a talk on pathogen surveillance and to demonstrate the features of @MyMicroreact at a #Bioinformatics workshop in my hometown #ClujNapoca #Romania @MuzeulZoologic @TheCGPS #AntimicrobialResistance #AMR
