Open data linkage, visualization and sharing for genomic epidemiology and phylogeography @thecgps @bdi_oxford Funded by Wellcome & Li Ka Shing foundation.
Joined May 2015
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Thanks for reporting - Normal service resumed - might have been too much turkey - thanks for bearing with us :-)
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Microreact retweeted
great to see @myMicroreact being utilised to interpret epi-linked sequence data @NorwichResearch, @NNUH, @NHSuk, @CovidGenomicsUK, and @PHE_uk
Since COVID-19 hit the UK in March, we've been at the forefront of genomic sequencing – sequencing over 18,000 samples.
Our new photo essay explores the collective effort of the Quadram, @NorwichResearch, @NNUH, @NHSuk, @CovidGenomicsUK, and @PHE_uk: ow.ly/vVBx50E95GE
great to see @myMicroreact being utilised to interpret epi-linked sequence data @NorwichResearch, @NNUH, @NHSuk, @CovidGenomicsUK, and @PHE_uk
Since COVID-19 hit the UK in March, we've been at the forefront of genomic sequencing – sequencing over 18,000 samples.
Our new photo essay explores the collective effort of the Quadram, @NorwichResearch, @NNUH, @NHSuk, @CovidGenomicsUK, and @PHE_uk: ow.ly/vVBx50E95GE
RoomRater Microreact edition: cheery flowers, newly minted genomic epi', but cat has been staring at @mymicroreact trees for too long - 10/10 @KCMellor
Celebrating #InternationalWomenInScienceDay #WFH with fine feline company. Proud to have finished my genomic epi PhD during lockdown and to be working with the awesome @pneumowatch team #WellcomeGenomeWomen @sangerinstitute
Genomics of SARS-CoV-2 in The Philippines - Great to see Microreact use for delivering insight as part of @geco_phl @inezmedado @RITMPH
We've also made a @MyMicroreact project to take a look at what we know about #SARSCoV2 in the #Philippines so far (using all the shared GISAID and NCBI genomes). Take a look! microreact.org/project/4hz5H…
Great to see Microreact making an appearance in this important announcement @TheCGPS @bdi_oxford
We’re pleased to announce a donation of £100 million from @INEOS to establish the new INEOS Oxford Institute, helping us to combat one of the world’s greatest healthcare challenges - antimicrobial resistance >> ox.ac.uk/news/2021-01-19-100…
Also, here's a thread showing a quite prominent (and continually inspiring) fellow countryperson viewing SARS-CoV-2 data within NZ via Microreact (via another friend @Joepdl ) xitter.cf/ESRNewZealand/status/1…
Prime Minister @jacindaardern made a surprise visit to ESR today to say thanks for the hard work and long hours our staff have put in during the COVID-19 pandemic. She was fascinated by how we are helping to understand the latest outbreak through genome sequencing
Hi @gringene_bio - here's a previous thread where we highlighted placing NZ at the centre point of the projection (in response to our friend @sciolato who highlighted similar issue: xitter.cf/MyMicroreact/status/12…
Thank you for flagging @sciolato We had the team work tirelessly to sort out and here you go. This project also shows another new(ish) feature of being able to use emoji's as icons, and also linking directly to a Google Sheet. #OneLessKiwiproblem Aroha!
microreact.org/project/5eNVe…
we are chuffed to see @jacindaarden lecturing @ESRNewZealand on SARS-CoV-2 lineages with Microreact ;-)
Prime Minister @jacindaardern made a surprise visit to ESR today to say thanks for the hard work and long hours our staff have put in during the COVID-19 pandemic. She was fascinated by how we are helping to understand the latest outbreak through genome sequencing
Hi @typeMAT12 - absolutely, Microreact does not need trees for you to be able to look at your data - simply drag a csv (or link to a gsheet) - if lat/lons present you'll get a map - shout if you need any additional stuff for lineage display as the charting is an easter egg atm!
Microreact retweeted
Excited to share 1st preprint from our lab! Genomic analysis of clinical Campylobacter strains from Chile led by Veronica Bravo tinyurl.com/y7wr4fsf Great collaboration with @narjol1 and Lorena Porte, Thomas Weitzel @Clinicaalemana! @MyMicroreact link microreact.org/project/VbEQs…
Genomic analysis of the diversity, antimicrobial resistance and virulence potential of Campylobacter jejuni and Campylobacter coli strains from a private health care center in Central Chile biorxiv.org/cgi/content/shor… #bioRxiv
and here's the link to the Google spreadsheet that sits behind the Microreact docs.google.com/spreadsheets…
Thank you for flagging @sciolato We had the team work tirelessly to sort out and here you go. This project also shows another new(ish) feature of being able to use emoji's as icons, and also linking directly to a Google Sheet. #OneLessKiwiproblem Aroha!
microreact.org/project/5eNVe…
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NEW TREE VIEWER UPDATE: All projects now feature a vastly enhanced tree viewer (phylocanvas) that scales to 100s of thousands of leaves - here's a data linked tree of global SARS-CoV-2 genomes via the @CovidGenomicsUK Check out your projects. microreact.org/project/cogco…
Microreact retweeted
UPDATE: 22,218 SARS-CoV-2 @CovidGenomicsUK seen here within the global tree (n=33,904). Much improved tree viewer in @MyMicroreact along with global (pangolin) lineage distribution. Mammoth effort from across the UK sequencing and analysis centres microreact.org/project/cogco…
Microreact retweeted
SeqCOVID Spain @MyMicroreact podemos ver la distribución de muestras y linajes en el tiempo y el espacio de los genomas generados en el consorcio.
microreact.org/project/SiIqq…
seqcovid.csic.es/microreact/
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