@pathogenomenick

Professor of Microbial Genomics and Bioinformatics @unibirmingham, @MRCClimb, Sr. Genomics Adviser @UKHSA, CSO @microbesNG

 Birmingham, UK
lab.loman.net/
Joined October 2009
  • Tweets66.7K
  • Following1.6K
  • Followers34K
1.7KMedia
Find me over where the skies are bluer
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📢 We're excited to introduce Pathoplexus, a specialized sequence database for human viral pathogens! 🌍 🧬 Launching with 4 viruses, Pathoplexus.org combines modern open-source software with transparent governance to improve global pathogen sequence sharing. 1/14

Pathoplexus | Home

Pathoplexus is a new, open-source database dedicated to the efficient sharing of human viral pathogen genomic data, fostering global collaboration and public health response.

pathoplexus.org
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Watch this space! ARTIC tools & resources for #mpox sequencing and analysis coming very soon! @wellcometrust @nanopore @illumina #molecularepidemiology #pathogen #pathogensurviellance #bioinformatics #epidemiology #virus #outbreak #clinicalvirology #sequencing
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Today ARTIC provided training to an #mpox workshop by @inrb_kinshasa in DRC, with participants from 8 countries @wellcometrust @nanopore @illumina #molecularepidemiology #pathogen #pathogensurviellance #bioinformatics #epidemiology #virus #outbreak #clinicalvirology #sequencing
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Nick Loman retweeted
Matt Loose@mattloose
19 Aug 2024
Representing a lot of hard work from @NininUon @DrT1973 @DeepSeqNotts @Scalene and @pathogenomenick pleased to share biorxiv.org/cgi/content/shor… which captures all our experience with ultra long read sequencing on @nanopore - a lot has happened since @scalene first generated ultras!
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Consider applying to be part of @WHO’s Technical Advisory Group for Virus Evolution (TAG-VE) We are expanding to not only cover #COVID19, but other pathogens with epidemic and pandemic potential (eg #mpox #MERS-CoV #dengue and more) Call for experts⬇️ who.int/news-room/articles-d…
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Group photos from Genome Science conference in Bristol - I'm in the last one! 👍 @JordiPaps #genomescience #gsuk24 3,2,1, woo science! 📸
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Nick Loman retweeted
Alex Cagan@ATJCagan
16 Jul 2024
The second part of the evolving technologies session at #GenomescienceUK @UltimaGenomics @nanopore @10xGenomics
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Nick Loman retweeted
Alex Cagan@ATJCagan
16 Jul 2024
First evolving technologies session at #genomescienceUK
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Find out more about the inner workings of our @nanopore based whole plasmid sequencing service. Includes a prime example of why you should always validate your plasmids - even if they're commercial vectors! linkedin.com/pulse/high-qual… #PlasmidSequencing #ProductDevelopment

High Quality Plasmid Sequencing

Can you believe it’s been more than a year since we launched our plasmid sequencing service!? PlasmidSeq offers rapid turnaround, full length plasmid sequencing at an incredible price of just £10 per...

linkedin.com
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Not one of Enid Blyton’s best…
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First mpox virus clade Ib cases in Goma, Nord Kivu, DRC: Potential risk for a larger outbreak. virological.org/t/mpox-clade…

Mpox Clade Ib cases in Goma

First mpox virus clade Ib cases in Goma, Nord Kivu, DRC: Potential risk for a larger outbreak Since the identification of the first human case of mpox in 1970, the Democratic Republic of the Congo...

virological.org
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SARS-CoV-2 provides an unprecedented opportunity to watch evolution occur in real time. It also happens to be showing the pervasiveness of many misconceptions about evolution, even among scientists with limited knowledge of evolutionary biology. Here's a list and explanations. 🧵
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Doesn’t seem all that secure for a nuclear code
Dan Jackson
@northumbriana
5 Jul 2024
Sir Keir will be getting the nuclear codes around about now (1234)
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I've broken my self-imposed Twitter ban because you can't not check Twitter on election night.
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I am excited to win a CZI EOSS grant! This is the first grant I have ever won after 20+ years in science. It feels wonderful to finally be funded for my open-source contributions. With @wytamma we will deliver the next generation of my popular Snippy software! 🦘🦘🦘 – at Melbourne, Victoria
biohub
@biohub
27 Jun 2024
Open source tools are crucial for biomedical research. We're collaborating with @KavliFoundation + @Wellcometrust to support developers & maintainers of critical #OpenSource projects, promoting innovation & community engagement in the field. More ▶️ czi.co/3zjN56l
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Nick Loman retweeted
Ryan Wick@rrwick
5 Jun 2024
New major version of SPAdes - very exciting! github.com/ablab/spades Unicycler isn't under active development anymore (as you can see from all the unanswered issues 😢), but I did just push a quick fix to make it work with SPAdes v4: github.com/rrwick/Unicycler
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DECODING GENOMES - from sequences to phylodynamics: We are proud to present our book on how to analyse genomic sequences with an evolutionary perspective. See decodinggenomes.org for a free pdf, Amazon links for print orders, and further information. Great team effort 1/2
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This week the kitome paper reached 3,000 citations! It was our turn to bake for the departmental cake morning, so I made something inspired by Figure 1. (With apologies for the quality of the icing, this is not my strength) @_Faecal_Matters @pathogenomenick @MikeyJ
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🦟🩸🧬 Congratulations Jeremy Mirza, @pathogenomenick & colleagues on "Tracking arboviruses, their transmission vectors and potential hosts by @nanopore sequencing of mosquitoes"! All-in-one: ✅Mosquito species ID ✅Host blood meal ID ✅Viral diversity microbiologyresearch.org/con…

Tracking arboviruses, their transmission vectors and potential hosts by nanopore sequencing of...

microbiologyresearch.org
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