@BioComputeObj

BioCompute is a community effort to standardize bioinformatic workflows, predominantly in #NGS.

 Washington, DC
biocomputeobject.org/
Joined May 2018
  • Tweets73
  • Following49
  • Followers90
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Join us on May 10th at the @FDA, with @velseraofficial & @dnanexus for an impactful workshop. Register early to secure a spot for the free workshop that aims to widen adoption&usage of BCO within the regulatory context. For more info & registration, visit: eventbrite.com/e/biocompute-…
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‼️Spread the word to those in the #bioinformatics world‼️We are announcing the Poster Session at the #BioCompute #Conference on May 10th! Seeking poster abstracts about #computational #workflows & top 5 will give a lightning talk More info here: wiki.biocomputeobject.org/in…
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BioCompute is participating in @FDA Scientific Computing Days. Our video "Updates to #BioCompute Tools and Guidelines for Use" is posted at fda.gov/drugs/news-events-hu… Please vote for us @ surveymonkey.com/r/2023SCDPo…

2023 Scientific Computing Days - Poster Gallery

2023 Scientific Computing Days - Poster Gallery

fda.gov
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#BioComputeObjects will be attending the Common Fund Data Ecosystem (@cfdenih) Spring Meeting 2023 in Bethesda, MD this week. The team will be giving a lightning talk and presenting a poster on the #BioCompute-CFDE-WPP collaboration project.
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Presented #BioComputeObjects & tools developed from @velseraofficial and @DNAnexus with the cross-industry Advanced Virus Detection Technologies Interest Group (AVDTIG) last week. If interested in a training session or a pilot study contact at biocomputeobject.org
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The #CFDE playbook partnership, which focuses on building integrated #tools and #databases with several CF DCCs, is using #BioComputeObjects to trace the playbook #workflows.
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Could be some interesting things for #biocompute to come out of this as well! 👀 #glycoscience #BioComputeObjects #Bioinformatics
GW Dept. of Biochemistry & Molecular Medicine@gwbmm26 Oct 2022
Congratulations to Dr. Mazumder on his NIH OT award to study the Harmonization of GlyGen glycoconjugate and glycan array data for integration into CFDE. Way to go!!!
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We would like to share some great news! Drs. Mazumder and Kahsay have received an NIH R24 award for a study that will enhance the capability of GlyGen as a central resource for glycans and glycoconjugates and serve the biomedical research community. Congratulations Raja and Robel
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Hi! If you know anyone who is relatively new to bash scripting in bioinformatics, particularly if they want to use the advanced features of ⁦@dnanexus⁩ or #ukbrap, please point them to this site by my colleague ⁦@tladeras⁩ : laderast.github.io/bash_for_…
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The #BCOnexus docker image is now available from hub.docker.com/r/bcodocker/b…, which presents a graphical user interface for the import, parsing, and export of #BioComputeObjects from @dnanexus. Submission to the #BioCompute #API (biocomputeobject.org/api/doc…) is also supported.#workflows
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BioCompute retweeted
Sergei Pond@sergeilkp6 Oct 2022
Maybe someone/something has already done? Is there a list which matches GenBank SARS-CoV-2 consensus genomes with underlying SRA NGS files? Asking for a friend here.
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If you missed the #BioCompute #workshop last week, the recording and slides can be found at hive.biochemistry.gwu.edu/pu…
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The #biocompute workshop will be held next Tuesday, Sept 13th. Introducing New Tools for Building #biocomputeObjects on @dnanexus, @SevenBridges, and @galaxyproject for deposit to the public access-controlled BioComputeDB. Please register at eventbrite.com/e/building-bi…

Building BioCompute Objects on three popular Bioinformatics platforms

New tools for building BioCompute Objects on DNAnexus, Seven Bridges, and Galaxy for depositing to access controlled BioComputeDB.

eventbrite.com
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Tools from @SevenBridges @dnanexus and @galaxyproject will be featured! #BioCompute #BioComputeObjects
BioCompute@BioComputeObj18 Aug 2022
A new BioCompute workshop will be held on September 13th via WebEx! Learn how to create BCO records from your #workflows directly on popular #bioinformatics platforms, and how to deposit them into an access-controlled database. Please register here: eventbrite.com/e/building-bi…
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A new BioCompute workshop will be held on September 13th via WebEx! Learn how to create BCO records from your #workflows directly on popular #bioinformatics platforms, and how to deposit them into an access-controlled database. Please register here: eventbrite.com/e/building-bi…
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"Communicating regulatory high-throughput sequencing data using BioCompute Objects" A project that was more than 4 years in the making! Shout out to @HadleyKingIV, @NeuroGenomics, @Snehby, @JPat1546, @rmazumde from @GWSMHS and @viralnerd sciencedirect.com/science/ar…
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Interested in bioinformatics, knowledgebases and algorithm development? Come work with us in DC (remote work also possible) gwu.jobs/postings/90020
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BioCompute retweeted
GW SMHS@GWSMHS15 Nov 2021
A consortium led by @GW_HIVE_Lab, @rmazumde, and @Embleema, with @TempleUniv, has received @FDA funding to advance the work against #infectiousdiseases. Read more: bit.ly/3FaDCvY via @TheVDT
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BioCompute retweeted
Ben Busby!@DCGenomics3 Nov 2021
Hi folks! If you know anyone who does or is interested in computational biology related to dementia, please send this to them or simply retweet. Thanks! demondementia.com/neurohack2…
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