Biochemical semi-automaton and local minima of entropy. Thrives on reduced organics. Especially beer. #BioCompute
Washington, DC
Joined March 2009
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So excited about this project! The project is part of an @NSF-funded cooperative agreement with @Internet2 called "Exploring Clouds for Acceleration of Science," and will create a library of BCOs on @awscloud, which can be accessed/contributed to through Galaxy.
#biocompute
Development of BioCompute Objects for Integration into #UseGalaxy in a Cloud Computing Environment, @rmazumde funded by @Internet2 & @NSF E-CAS project internet2.edu/news/detail/17… internet2.edu/vision-initiat…
It's so exciting to see community support for BioCompute starting to mature. If you want to learn about creating workflow records (BCOs) on major platforms like Seven Bridges, DNAnexus, and Galaxy, and depositing them into access controlled databases, come join us!
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Jonathon Keeney retweeted
If you are interested in a postdoc in Chicago, check out this event where you can meet with potential advisors across institutions:
chicagolanddiversepostdocrec…
Really nice video articulating a feeling I think a lot of folks have. I have watched the anti-racism sentiment lead to at least one policy that, ironically, ended up hurting poc more. Maybe a more thoughtful and - above all, humane - approach is needed.
"Ideology twisting scholarship with dangerous consequences is a phenomenon hardly limited to the Soviet Union. It's happening here, right now, in America, in an effort to spread an intolerant orthodoxy masquerading as 'Anti-racism.'"
- FAIR Advisor @JohnHMcWhorter.
Jonathon Keeney retweeted
The IVS team at @CajalNeuro is hiring another surgeon! We are a friendly group of hardworking scientists with a supportive team culture searching for novel therapeutic targets in neurodegenerative disease. Mouse stereotaxic surgery experience required. boards.greenhouse.io/cajalne…
Jonathon Keeney retweeted
Paid undergraduate internships in all areas of cell and cancer biology, including computational biology. Come spend the summer doing amazing and impactful research while also enjoying all that the pacific northwest has to offer!
Jonathon Keeney retweeted
Ridiculous!
Age at first R01 grant... just when you think it can't keep getting more ridiculous it does. Median age is now up to 42... long live the long lived gerontocracy. We desperately need to do more to accelerate the careers of younger scientists in the US tinyurl.com/2utfbj2m
Jonathon Keeney retweeted
Announcing an open faculty position at @OHSUKnight in Cancer Data Science! Great team science environment with substantial resources at a top cancer center and at @OHSUNews, one of the nation's best academic medical centers. Let me tell you more! 1/13 🧵
facultycareers-ohsu.icims.co…
Jonathon Keeney retweeted
I am happy to be part of this collaboration and excited to see the work in preprint.
Really excited to see the result of this collaboration up as a preprint! Congrats to the team and everyone involved! 🥳
BioCompute Objects to communicate a viral detection pipeline with potential for use in a regulatory environment
biorxiv.org/content/10.1101/…
Jonathon Keeney retweeted
Thanks to those who attended our workshop w/ @dennisadean2 & @SevenBridges: “Towards Interoperability: Generating BioCompute Objects on Cloud-Based Platforms”
Keep up to date on BCO: biocomputeobject.org/events
youtu.be/vQpiAsc6Fw8
#BioComputeObjects #BioCompute #CloudComputing
Jonathon Keeney retweeted
Please RT! We are looking for a postdoc interested in viruses and CryoEM and cheese and wine and culture and history and......#postdocjobs #cryoEM 🔬🦠 🧀🍷🎭🇫🇷
Jonathon Keeney retweeted
Our bioinformatics/data integration group will soon have couple of exciting positions open at GW. If you have experience in tool & knowledgebase development with background in glycobiology, proteomics, genomics, or biomarkers pls. contact hive.biochemistry.gwu.edu/co…. Sep 1st start dt
This is so good. It's exactly the kind of thing we need more of to help comprehend the flow of organics through a biological network, the associated energetics, and how perturbations can affect it, rather than static images.
Animation Lab postdoc Shraddha @Na_y_ak is very excited to release "The Journey of a Metabolite," a lesson on metabolic flux for undergrads: biochem.web.utah.edu/iwasa/m…
The gif below shows a glimpse of carbon flux through glycolysis (click the link to see the rest and much more!)
Terrific workshop today. Very well done and very helpful!
Jonathon Keeney retweeted
"Bioinformatics tools developed to support BioCompute Objects"
New #BioComputeObject Tools paper in @biocurator's #openaccess journal Database discussing #BCO on Cloud-based platforms: HIVE, Cancer Genomics Cloud (CGC) and @galaxyproject ,
academic.oup.com/database/ar…
#BioCompute
![Figure 3. User BCO training process.
The BioCompute training unit (1) introduced participants to the concept of BioCompute, (2) offered hands-on exercises with two genome analysis platforms (HIVE and CGC), (3) familiarized participants with a prominent literature resource (PubMed), (4) introduced the concept of data sources [through the OncoMX knowledgebase (https://www.oncomx.org/)], (5) described the process of finding a suitable publication with an associated open source pipeline, (6) introduced the JSON language as a suitable segue into training users on the BCO Portal (previously BCO Editor) and (7) provided users with a Q&A opportunity prior to final submission of BCOs to the precisionFDA BCO App-a-thon.](https://pbs.twimg.com/media/Ex9yoiTW8Aoj6Dd.jpg?name=orig)
ALT Figure 3. User BCO training process. The BioCompute training unit (1) introduced participants to the concept of BioCompute, (2) offered hands-on exercises with two genome analysis platforms (HIVE and CGC), (3) familiarized participants with a prominent literature resource (PubMed), (4) introduced the concept of data sources [through the OncoMX knowledgebase (https://www.oncomx.org/)], (5) described the process of finding a suitable publication with an associated open source pipeline, (6) introduced the JSON language as a suitable segue into training users on the BCO Portal (previously BCO Editor) and (7) provided users with a Q&A opportunity prior to final submission of BCOs to the precisionFDA BCO App-a-thon.
Jonathon Keeney retweeted
.@CajalNeuro is still growing! Check out our 3 new RA positions for candidates with experience in molecular biology, viral production, and imaging. We are building an amazing team - please join us! boards.greenhouse.io/cajalne…
Jonathon Keeney retweeted
1) Internship at @genentech. Shaped the way I think about money in running my own lab
2) Started over in a new grad lab/field after >4.5yrs. Scary but haven’t been scared of taking a risk since
I'm happy about the order, but also surprised. Phone apps regularly take and transmit screenshots, location records, and so much more. Even text that's written in a messaging app and then deleted and not sent. Why draw the line here?
Today's facial recognition surveillance technologies are discriminatory and dangerous.
The @FTC has just ordered @ParavisionAI to destroy any technologies it illegally enhanced by photos obtained through the Ever photo-sharing app. nbcnews.com/tech/security/mi…
