The GW HIVE Lab is an academic lab headed by @rmazumde in the Department of Biochemistry and Molecular Medicine at the George Washington University.
Washington, DC
Joined October 2018
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HIVE Lab has a fantastic group of interns this summer! Special thanks from GWU for all your hard work. Excited to see what's next for these young scientists!
GW_HIVE_Lab retweeted
Listen to ep. 1 of #IEEESAVoice Re-Think Health Podcast series w/ @rmazumde and @NeuroGenomics about real-world benefits and use cases of #IEEE2791-2020 in facilitating expedited bioinformatics communications exchange protocol in bio/clinical research. bit.ly/3p3fIKx?utm_campaign=…
Learn how to leverage #BioComputeObjects for #NGSAnalysis accompanying regulatory submissions
Our preprint is out now! A how-to guide on #BioComputeObjects accompanying submissions to the @FDA.
This proof-of-concept demonstrates how "...to effectively capture and clearly communicate NGS analyses within regulatory submissions"
biorxiv.org/content/10.1101/…
Find out how to perform #MachineLearning analysis on #Metagenomics data in Matlab with the #Microbiome team at #GWHiveLab here: youtu.be/Q3ZCwV2touQ
Read on to learn more about the @BioComputeObj standard for communicating #DataAnalysis pipelines
Strengthening the BioCompute Standard by Crowdsourcing on PrecisionFDA biorxiv.org/cgi/content/shor… #bioRxiv
ICYMI -- We present the sensitivity of a novel standalone algorithm for accurate identification of subpopulations & recombination patterns in chronic HIV-1 patient samples. #Bioinformatics #ViralGenomics #HIV msphere.asm.org/content/5/5/…
GW_HIVE_Lab retweeted
@gly_gen has now integrated protein to glycosylaminoglycan (GAGs) interaction data from #MatrixDB in collaboration with Sylvie Ricard-Blum. The data can be accessed through GlyGen-beta (beta.glygen.org/). Example beta.glygen.org/protein/Q151…
@rmazumde
@flyglyco
Great 4 year collaboration culminating in an outstanding paper! 👏👏👏 #HIVRecombination #Algorithms #ViralGenomics #Bioinformatics
We present a novel standalone algorithm for accurate and reliable identification of subpopulations & recombination patterns in chronic HIV-1 patient samples. It is important for drug resistance surveillance and vaccine development.
msphere.asm.org/content/5/5/…
@rmazumde @GW_HIVE_Lab
👏👏👏
Commisioner of @US_FDA, @SteveFDA, specifically mentions BioCompute during his opening address at the annual Scientific Computing Days!
fda.cvent.com/2019SCD
There's still time to register for TODAY's noon workshop with @BioComputeObj!!
Happening today: @BioComputeObj will hold a workshop for ISB (@biocurator) "Methods for communicating provenance of data and analysis". Examples from @OncoMX_KB & @gly_gen #Database will be featured, as well as BCOs in @galaxyproject & @CberHive.
biocuration.org/biocuration-…
10 days til the workshop on #BioComputeObjects for #DataProvenance tracking and communication, read below for registration details!
Save the date! 𝗦𝗲𝗽 𝟮𝟰 𝗮𝘁 𝟭𝟮𝗣𝗠 𝗘𝗦𝗧 Join us and @biocurator as we workshop Methods for Communicating Provenance of Data and Analysis in #biocuration. Workshop is free, registration is required. See biocuration.org/biocuration-… #biocompute #usegalaxy
A belated but no less sincere congratulations to long-time lab mate and friend, Dr. John Torcivia, who successfully completed his PhD earlier this month. The celebration will come, but for now a virtual #Cheers will have to do! 🥂 #Bioinformatics #CancerGenomics #CongratsDr
Congrats to @syntheticgio a #BioInfoBiochem MS program alumni and PhD student in @rmazumde lab for a successful PhD dissertation defense titled "An Exploration of Cancer-Associated Non-Coding Variations in Whole Genome Sequencing Data". Kudos Dr. John Torcivia! @GWSMHS #PhDLife
Geneious demo this morning at 11AM - use contact details below to register! #Bioinformatics #RNASeq
Next #GWMGPC Open House will be 2morrow 08-11 from 11-12:30am. #GWBMM faculty, post-docs, #GWBioinfoBiochem students are welcome. Demo of intro to RNA-seq analysis using Geneious and @BiocomputeObj enabled Galaxy on AWS. Contact @hadleykingIV for details.
GW_HIVE_Lab retweeted
Presenting short talk & demo at #BCC2020! "Implementation of the IEEE-2791-2020 standard (BioCompute Objects) in Galaxy via workflow invocations"
sched.co/clAB
Checkout our Galaxy Fork for the implementation:
github.com/biocompute-object…
@sched
@galaxyproject
@BioComputeObj
GW_HIVE_Lab retweeted
The BioCompute Object Specification Project, led by @rmazumde & @GW_HIVE_Lab at #GWSMHS, has been approved for publication as an internationally recognized standard by @IEEESA: bit.ly/3cIYGMb
Check out the new paper from the #GlyGen team written by our @GWSMHS #HIVELab members and collaborators. #Glycoinformatics #DataIntegration #Glycobiology #Database #Knowledgebase
Check out our recent publication. GlyGen data model and processing workflow. tinyurl.com/yahcy35d Describes the GlyGen data model, processing workflow, and data access interfaces.
#glygen glygen.org
@rmazumde
@flyglyco
We are proud to announce the release of the #GutFeelingKnowledgeBase v4.0 which includes #GutMicrobiome data from patients with therapy-resistant epilepsy, stats, and updated organism characteristics. Check it out! 👀 hive.biochemistry.gwu.edu/gf… #Bioinformatics #DataIntegration
Happening NOW! Tune in to learn more about #BCO and other @NSF E-CAS updates #Bioinformatics #DataIntegration
Online, in 24 hours: Development of BioCompute Objects for Integration into Galaxy in a Cloud Computing Environment internet2.edu/blogs/detail/1… @BioComputeObj #UseGalaxy Part of by @Internet2 & @NSF E-CAS project
