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Boston
Joined June 2020
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>50% primate brain, >80% primate muscles, and every layer of the primate retina.
Dyno Therapeutics co-founder @samsinai on how his team cracked the blood-brain barrier well enough to reach 50% of neurons with a single injection: "For brain specifically, the brain has this extra layer of defense called the blood brain barrier. It's really put there to prevent anything to get in." "What we have done is actually in primates we can show that we can get up more than 50% of neurons, through a systemic injection." "You're just injecting in the veins, and then the virus actually makes its way into the brain." "Neurons are a primary target, but it could be in some cases glial cells, depending on the disease. Solving pan brain, meaning all of brain delivery, is a key objective there."
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Since the 1960s, the genetic code has been used to predict protein sequences from DNA and mRNA sequences.  Our @Nature article demonstrates that these predictions miss thousands of protein sequences present in human tissues. Across >1,000 human samples, we identified numerous abundant proteins whose amino acid sequences differ from those predicted by the genetic code. These proteins are not rare translation byproducts. They accumulate to thousands of copies per cell. Some are more abundant than the proteins predicted by the genetic code from the same transcripts. Their abundance reflects a combination of alternate RNA decoding mechanisms — including codon-anticodon mismatches, tRNA abundance, and RNA modifications — and selective stabilization of the resulting proteins. The last factor – protein stability – emerges as a major determinant of protein abundance across proteins, proteoforms and cell types: slavovlab.net/research.htm#P… Alternate RNA decoding is pervasive across functional groups of proteins, healthy and diseased tissues. It affects proteins playing key roles in neurodegeneration, and some alternately decoded proteins show strong enrichment in tumors compared to their surrounding tissues. This discovery has been a long and exhilarating journey with Shira Tsour and the @slavovLab team. It started in 2019 and proceeded through many challenges and thrilling highs. A journey that has opened new perspectives that we long to explore! 1/
We report many proteins not predicted by the genetic code. They are stable & abundant O( 10³ ) copies / cell. Generative mechanisms include codon-anticodon mismatches & RNA modifications. Their abundance depends on codon frequency & protein stability. biorxiv.org/content/10.1101/…
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Excited to share our new preprint "Genetic code expansion enables plant-directed control of bacterial activity", a fantastic collaboration with @kunjapur lab! biorxiv.org/content/10.64898…
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Apply to the Microbial Fuel Cells MudTronics competition: mi-hy.eu/mudtronics/ MudTronics is a collaborative competition that brings together bio, tech, and art/design to explore what we can do with microbial fuel cells. Deadline June 6th, 2026
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science.org/doi/10.1126/scie… これはreverse translationの入口と言っても良いのでは・・・?こんな驚きのタンパク質が自然界から見つかってくるからこそ、遺伝子マイニングはやめられませんね。。
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Excited to share our new paper in @NatureChemistry! Building on our Rare Codon Recoding (RCR) work @ScienceMagazine, we developed a multi-rare-codon strategy enabling the simultaneous incorporation of up to 5 distinct ncAAs in mammalian cells! nature.com/articles/s41557-0…
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What's great about this is that we can finally start putting numbers on the big questions in terraforming research. arxiv.org/abs/2510.07344
Mars could be green in our lifetime, but you’d still need an oxygen mask. With new capabilities in spaceflight & synthetic biology, current plans for Mars terraforming look very different from past visions. A thin, life-supporting atmosphere might be doable with modern tech.
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If you are an highschool student and you are conducting research in a lab, you are a scientist. If you are an undergraduate student and you are conducting research in a lab, you are a scientist.
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Machine learning-guided evolution of pyrrolysyl-tRNA synthetase for improved incorporation efficiency of diverse noncanonical amino acids rdcu.be/ew4uf
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Michelle Chang of @PrincetonChem and colleagues publish in @NChemBio: “Terminal alkyne formation by a pyridoxal phosphate-dependent enzyme.” Great work! nature.com/articles/s41589-0…
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2 of 2: Instead of activating a water molecule for hydrolysis, as previously thought, release factors induce a structural change in the transfer RNA, enabling its own 2’OH group to attack and break the bond, a universal process in all organisms. science.org/doi/10.1126/scie…
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Excited to share our newest paper, online today @Nature! We report the discovery of a highly unusual mechanism of antiviral immunity through the synthesis of long, homopolymeric DNA. nature.com/articles/s41586-0…
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There is also a Colab notebook for EvoBindRare now! Try it and let us know what you think: colab.research.google.com/gi…
RareFold predicts and designs proteins with noncanonical AAs. With EvoBindRare, we designed linear & cyclic peptide binders with high affinity & novel binding modes, validated in wet lab. A step toward next-gen therapeutics. 📄 biorxiv.org/content/10.1101/… 💻 github.com/patrickbryant1/Ra…
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Happy to share the peer-reviewed and updated version of our work on OrthoRep-driven evolution of aaRSs for genetic code expansion with unnatural amino acids. Congrats to @yuichi_furuhata, a true master bioengineer, on leading this excellent work! nature.com/articles/s41467-0…
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