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Our latest piece of work with @LangridgeLab ! Dynamic AMR mobile genetic element on a P1 phage-plasmid from Salmonella Typhi, check it out
microbiologyresearch.org/con…
David Greig retweeted
Evolutionary dynamics of the multidrug-resistant Salmonella Infantis harbouring the pESI megaplasmid across Europe. Find out more in MGen: doi.org/10.1099/mgen.0.00178…. #MGen
minibwa v0.5+0.6:
* fixed an issue in PE mapQ (inherited from bwa-mem)
* more conservative PE mapQ (learned from dragmap)
* HG002 var calling: FP down but FN up
* memory-mapped index loading
* user-defined insert size distribution
* APIs working for BS-seq
github.com/lh3/minibwa/relea…
David Greig retweeted
Characterization of genetically novel chimeric plasmids from Salmonella Heidelberg conferring multi-drug resistance and increased ... biorxiv.org/content/10.1101/… #biorxiv_micrbio
David Greig retweeted
A reminder that registration for CampyUK 2025 is now open and places are starting to fill:
👉 campyuk.web.ox.ac.uk/home
Please feel free to share with friends
David Greig retweeted
🚨 We're recruiting! The Journal of Medical Microbiology is seeking two Editors for our Molecular and Microbial Epidemiology section. Help shape the future of microbiology research.
📅 Apply by 20 June 2025
🔗 microb.io/News
David Greig retweeted
The GBRU team at @UKHSA is hiring a bioinformatician for a fixed-term role!
Join a dynamic and supportive team working on gastrointestinal infections.
Just a few days left to apply - don’t miss out!
Apply at: tinyurl.com/gbru-bioinfo
Deadline: Thursday 15th May 11.55pm
David Greig retweeted
Multi-country and intersectoral assessment of cluster congruence between pipelines for genomics surveillance of foodborne pathogens nature.com/articles/s41467-0…
David Greig retweeted
Eurosurveillance | Cholera due to exposure in Europe associated with consumption of holy water from Ethiopia, January to February 2025 eurosurveillance.org/content…
David Greig retweeted
Interested in how AI predicts acute kidney injury from vancomycin vs VPT therapy? Visit poster1 at 12 PM today to know more about this work with Will Bolton, @SupraChemina & @TmRawson! @CAMO_Net1 @HPRUamr #ICID2024 Chat to me about @MicrobioSoc's Knocking out AMR project too😊
David Greig retweeted
Antimicrobial resistance is rapidly rising in Shigella species. How up to date is your treatment guidance? Be sure to read our latest @LancetMicrobe comment to inform your thinking bit.ly/3Z6yNRa1/10
David Greig retweeted
It's HERE! Our long awaited paper revealing phylogenomic variations in #Salmonella Agona that lead to persistent infection in @PLOSPathogens
dx.plos.org/10.1371/journal.…
Thanks @gemma_langridge, @UKHSA's @MarieChattaway & Amina Ismail Ahmed, & @Winni_l08
Now to the next 3 papers..
David Greig retweeted
A little bit overdue, but here are my thoughts on @nanopore's recent release of Medaka:
rrwick.github.io/2024/10/17/…
David Greig retweeted
Trends in shigellosis notifications in England, January 2016 to March 2023 | Epidemiology & Infection | Cambridge Core @ksbakes @HPRUgi cambridge.org/core/journals/…
David Greig retweeted
#ISOPOLis the largest Listeriosis conference- proud to be a part the @UKHSA team- leading research in comparative genomics, food water microbiology & genomic epidemiology, great collaborations @TheQuadram @HPRUgi thanks @MATTwGilmour for a great conference!
David Greig retweeted
This is a fascinating paper in the current edition of @Eurosurveillanc carried out by public health colleagues in @UKHSA It relates to the journey towards a large STEC\VTEC outbreak in the UK in 2022. It’s really relevant to the Irish experience because we have one of the highest rates of STEC in Europe, but we don’t routinely have access to these types of environmental surveillance tools for our investigations. However, the story of this outbreak is reflected in our experience here….that climate change, overfarming and lack of access to mains water outside Dublin are all causing human disease….
David Greig retweeted
Our study investigating the role of climate change, extreme weather events 🌦️, and sheep 💩 on the large 2022 STEC outbreak in the UK now published in @Eurosurveillanc 🧵 (1/15)👇🏻
eurosurveillance.org/content…
#OneHealth #InfectiousDisease #STEC @UKHSA
David Greig retweeted
I am happy to share this genomics study on almost all seventh pandemic Vibrio cholerae isolates reported by European countries in 2022. A very nice collaboration with many friends and colleagues published today by @Eurosurveillanc
eurosurveillance.org/content…
David Greig retweeted
International #travel as a risk factor for #gastrointestinal infections in residents of North East England | Epidemiology & Infection | Cambridge Core - bit.ly/3XasHNu
@ksbakes @ClaireJenkins2 @HPRUgi
RT @IrishRugby: Come the day and come the hour!
A drop goal from Ciaran Frawley and a win for Ireland!
#TeamOfUs























