Belfast born scientist and PhD student having a go at Bioinformatics. Interests in E. coli (STEC), microbiology, genomics, bioinformatics and nanopore!

Belfast, Northern Ireland
Joined April 2017
Our latest piece of work with @LangridgeLab ! Dynamic AMR mobile genetic element on a P1 phage-plasmid from Salmonella Typhi, check it out microbiologyresearch.org/con…
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Evolutionary dynamics of the multidrug-resistant Salmonella Infantis harbouring the pESI megaplasmid across Europe. Find out more in MGen: doi.org/10.1099/mgen.0.00178…. #MGen
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David Greig retweeted
minibwa v0.5+0.6: * fixed an issue in PE mapQ (inherited from bwa-mem) * more conservative PE mapQ (learned from dragmap) * HG002 var calling: FP down but FN up * memory-mapped index loading * user-defined insert size distribution * APIs working for BS-seq github.com/lh3/minibwa/relea…
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New classification of Shigatoxin-producing E. coli strains according to their virulence potential (Anses opinon) #ecoli #stec #anses #food #outbreak dx.doi.org/10.2903/fr.efsa.2…
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A reminder that registration for CampyUK 2025 is now open and places are starting to fill: 👉 campyuk.web.ox.ac.uk/home Please feel free to share with friends
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🚨 We're recruiting! The Journal of Medical Microbiology is seeking two Editors for our Molecular and Microbial Epidemiology section. Help shape the future of microbiology research. 📅 Apply by 20 June 2025 🔗 microb.io/News
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The GBRU team at @UKHSA is hiring a bioinformatician for a fixed-term role! Join a dynamic and supportive team working on gastrointestinal infections. Just a few days left to apply - don’t miss out! Apply at: tinyurl.com/gbru-bioinfo Deadline: Thursday 15th May 11.55pm
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Interested in how AI predicts acute kidney injury from vancomycin vs VPT therapy? Visit poster1 at 12 PM today to know more about this work with Will Bolton, @SupraChemina & @TmRawson! @CAMO_Net1 @HPRUamr #ICID2024 Chat to me about @MicrobioSoc's Knocking out AMR project too😊
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David Greig retweeted
Antimicrobial resistance is rapidly rising in Shigella species. How up to date is your treatment guidance? Be sure to read our latest @LancetMicrobe comment to inform your thinking bit.ly/3Z6yNRa1/10
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David Greig retweeted
#ISOPOLis the largest Listeriosis conference- proud to be a part the @UKHSA team- leading research in comparative genomics, food water microbiology & genomic epidemiology, great collaborations @TheQuadram @HPRUgi thanks @MATTwGilmour for a great conference!
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This is a fascinating paper in the current edition of @Eurosurveillanc carried out by public health colleagues in @UKHSA It relates to the journey towards a large STEC\VTEC outbreak in the UK in 2022. It’s really relevant to the Irish experience because we have one of the highest rates of STEC in Europe, but we don’t routinely have access to these types of environmental surveillance tools for our investigations. However, the story of this outbreak is reflected in our experience here….that climate change, overfarming and lack of access to mains water outside Dublin are all causing human disease….
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RT @IrishRugby: Come the day and come the hour! A drop goal from Ciaran Frawley and a win for Ireland! #TeamOfUs