@BactGenRSS

Unofficial feed from https://xitter.cf/t.co/1rz9bxsFRF bacterial genomics subject. Maintained by @sentausa. Also on https://xitter.cf/t.co/xuiZyMP4ai

nature.com/subjects/bacterial-genomics
Joined August 2017
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356Media
A new core-genome MLST approach for Chlamydia trachomatis genomic surveillance and research nature.com/articles/s41467-0…

A new core-genome MLST approach for Chlamydia trachomatis genomic surveillance and research

Nature Communications - The use of whole-genome sequencing for classification and surveillance of the pathogen Chlamydia trachomatis is limited due to the lack of standardized typing frameworks....

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Trimeric autotransporter adhesins driving chain-like adhesion diversify surface colonization strategies in Shiga toxin-producing Escherichia coli nature.com/articles/s41467-0…

Trimeric autotransporter adhesins driving chain-like adhesion diversify surface colonization...

Nature Communications - In this study, the authors demonstrate that trimeric autotransporter adhesins drive bacterial chain-like adhesion, expanding the surface colonization strategies of Shiga...

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A prehistoric East-Asian Yersinia pestis genome and a ~5.3 ka trans-Eurasian expansion of plague nature.com/articles/s41467-0…

A prehistoric East-Asian Yersinia pestis genome and a ~5.3 ka trans-Eurasian expansion of plague

Nature Communications - Plague, caused by the pathogen Yersinia pestis, has affected human societies for millennia. Here, the authors screened 1,400 ancient human remains from eastern Eurasia and...

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A syntenic pangenome of Gardnerella reveals novel plasmids and phage, taxonomic boundaries, and species-level stratification of metabolic and virulence potential nature.com/articles/s41467-0…

A syntenic pangenome of Gardnerella reveals novel plasmids and phage, taxonomic boundaries, and...

Nature Communications - Bacteria of the genus Gardnerella are associated with bacterial vaginosis. Here, the authors compile and analyse a reference set of high-quality Gardnerella genomes,...

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Purine bias in bacterial genes is driven by runaway transcription nature.com/articles/s41564-0…

Purine bias in bacterial genes is driven by runaway transcription

Nature Microbiology - Purine bias is critical for gene expression in bacteria, preventing premature transcription in species that exhibit runaway transcription.

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High-Quality Genome Assembly, Metabolome, Pangenome, and Metabolic Models of Megasphaera hexanoica KCCM 43214T nature.com/articles/s41597-0…

High-Quality Genome Assembly, Metabolome, Pangenome, and Metabolic Models of Megasphaera hexanoica...

Scientific Data - High-Quality Genome Assembly, Metabolome, Pangenome, and Metabolic Models of Megasphaera hexanoica KCCM 43214T

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Long-term spatiotemporal evolution of drug-resistant Mycobacterium tuberculosis in China nature.com/articles/s41467-0…

Long-term spatiotemporal evolution of drug-resistant Mycobacterium tuberculosis in China

Nature Communications - Antibiotics have been used to treat tuberculosis for over 80 years. Here, Chen et al. analyze over 18,000 Mycobacterium tuberculosis genomes to reconstruct the temporal and...

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PromoterAtlas: decoding regulatory sequences across Gammaproteobacteria using a transformer model nature.com/articles/s41467-0…

PromoterAtlas: decoding regulatory sequences across Gammaproteobacteria using a transformer model

Nature Communications - Coppens & Ledesma-Amaro present a transformer-based computational model trained on 9 million bacterial sequences from over 3,000 species, which enables automated...

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Glucose-dependent acidification strategy by nectar-dwelling bacteria mediates pollen tube burst nature.com/articles/s41467-0…

Glucose-dependent acidification strategy by nectar-dwelling bacteria mediates pollen tube burst

Nature Communications - Nectar bacteria turn floral sugar into a weapon: Acinetobacter converts glucose to gluconic acid, acidifies nectar, and triggers pollen tube burst, revealing a...

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Large extrachromosomal replicons are widespread across bacterial lineages and show coordinated replication termination and spatial coupling with the chromosome nature.com/articles/s41467-0…

Large extrachromosomal replicons are widespread across bacterial lineages and show coordinated...

Nature Communications - Bacterial genomes often include extrachromosomal replicons, ranging from small plasmids to chromosome-scale replicons. Here, Czarnecki et al. analyse more than 40,000...

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Unravelling bacterial complexity at high resolution with single-cell transcriptomics nature.com/articles/s41564-0…

Unravelling bacterial complexity at high resolution with single-cell transcriptomics

Nature Microbiology - This Review summarizes recent advances in bacterial single-cell transcriptomics approaches, while also discussing technological and computational challenges remaining to be...

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Metabolomics-based and functional validation to explore the effect of the gut microbe-associated metabolite guanidinoacetic acid on rectal adenocarcinoma nature.com/articles/s41598-0…

Metabolomics-based and functional validation to explore the effect of the gut microbe-associated...

Scientific Reports - Metabolomics-based and functional validation to explore the effect of the gut microbe-associated metabolite guanidinoacetic acid on rectal adenocarcinoma

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A microbiome catalog of Chinese traditional artisanal cheeses provides insights into functional and microbial diversity nature.com/articles/s41467-0…

A microbiome catalog of Chinese traditional artisanal cheeses provides insights into functional and...

Nature Communications - While cheese is enjoyed globally, most of the known physiochemical and microbial characteristics are from western cheeses. Here, the authors expand the global catalogue of...

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Global genomic and molecular epidemiology of carbapenem-resistant Enterobacter hormaechei nature.com/articles/s42003-0…

Global genomic and molecular epidemiology of carbapenem-resistant Enterobacter hormaechei

Communications Biology - Global genomic analysis of carbapenem-resistant Enterobacter hormaechei reveals blaNDM-1 and mcr-9 on IncHI2/IncX3 plasmids, with high-risk clones ST171/ST190 driving...

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An ancient genome of Streptococcus pyogenes from a pre-Columbian Bolivian mummy nature.com/articles/s41467-0…

An ancient genome of Streptococcus pyogenes from a pre-Columbian Bolivian mummy

Nature Communications - Streptococcus pyogenes is a human pathogen responsible for a range of diseases. Here, the authors reconstruct an ancient S. pyogenes genome from a pre-Columbian Bolivian...

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Evolution of pandemic cholera at its global source nature.com/articles/s41586-0…

Evolution of pandemic cholera at its global source

Nature - The seventh cholera pandemic, driven by El Tor Vibrio cholerae, evolved separately in Bangladesh and India, with the Ganges Basin acting as the global source, and its evolution has been...

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Complete genome sequence of Sphingomonas sp. gentR, a high-level gentamicin-resistant bacterium nature.com/articles/s41597-0…

Complete genome sequence of Sphingomonas sp. gentR, a high-level gentamicin-resistant bacterium

Scientific Data - Complete genome sequence of Sphingomonas sp. gentR, a high-level gentamicin-resistant bacterium

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Integrating ANI and phylogenies for re-evaluation of Fusobacterium taxonomy and disease associations nature.com/articles/s41467-0…
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Acinetobacter baumannii’s lifestyle includes soil-dwelling colonization of decaying plant material and airborne spread nature.com/articles/s41467-0…

Acinetobacter baumannii’s lifestyle includes soil-dwelling colonization of decaying plant material...

Nature Communications - Little is known about the ecology and evolution of the nosocomial pathogen Acinetobacter baumannii outside the hospital. Here, Wilharm et al. show that the lifestyle of A....

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Rapid dissemination of Staphylococcus aureus in the neonatal intensive care unit is associated with invasive infection nature.com/articles/s41467-0…

Rapid dissemination of Staphylococcus aureus in the neonatal intensive care unit is associated with...

Nature Communications - In this work, authors use whole genome tracking in a neonatal intensive care unit to reveal a strong link between Staphylococcus aureus colonization and invasive infection,...

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