@radinagg

Bioinformatics Data Scientist | PhD in Computational Biology @imperialcollege @MRC_LMS @GroupLenhard

 London, England
Joined April 2019
  • Tweets69
  • Following249
  • Followers122
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Radina Georgieva retweeted
Sarvesh Nikumbh@sarveshnikumbh5 Dec 2023
🥳🥳 SeqArchR is now available online in PLOS Comp Biol doi.org/10.1371/journal.pcbi… - Give the article a read - Use seqArchR Bioconductor pkg - Appreciate simple but powerful NMF - Share feedback - Spread the knowledge 🙂🙂 @BorisLenhard @GroupLenhard @MRC_LMS @imperialcollege

Identifying promoter sequence architectures via a chunking-based algorithm using non-negative...

Author summary Transcription of genes by RNA polymerase II enzyme is known to begin at specific positions in parts of DNA sequence called promoters. These positions, called transcription start sites,...

journals.plos.org
Sarvesh Nikumbh@sarveshnikumbh6 Mar 2023
Happy to introduce *seqArchR*, an approach using non-negative matrix factorisation (NMF) for de novo identification of promoter sequence architectures. 1/7 biorxiv.org/content/10.1101/…
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Just 3 days left to apply for a #postdoc at @GroupLenhard @MRC_LMS - don't miss out!
Boris Lenhard@BorisLenhard30 Aug 2023
Come join us! Two postdoc positions in regulatory genomics-computational and a (mostly) experimental-available in our group to work on Metazoan promoters, enhancers, and their interaction. Computational: nature.com/naturecareers/job… Experimental: nature.com/naturecareers/job… Please RT.
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Interested in regulatory genomics? Two new #postdoc positions have just opened in our lab. @GroupLenhard @MRC_LMS
Boris Lenhard@BorisLenhard30 Aug 2023
Come join us! Two postdoc positions in regulatory genomics-computational and a (mostly) experimental-available in our group to work on Metazoan promoters, enhancers, and their interaction. Computational: nature.com/naturecareers/job… Experimental: nature.com/naturecareers/job… Please RT.
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Happy to share our study in which we used Siamese neural networks to develop a #DeepLearning method for replicate-based analysis of chromosome conformation contacts, in collaboration with ⁦@DanielRueckert⁩, spearheaded by ⁦⁦@ediem_aljibury⁩ nature.com/articles/s41467-0…
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Radina Georgieva retweeted
Boris Lenhard@BorisLenhard14 Aug 2023
Only two (and a half) days left to apply for a PhD studentship in our group! Seeking a PhD student for in-depth study into promoter architectures, evolution of regulatory elements, and enhancer-promoter compatibility. Please RT or get in touch. findaphd.com/phds/project/fu…

Function and evolution of genomic regulatory elements in multicellular organisms at Imperial...

PhD Project - Function and evolution of genomic regulatory elements in multicellular organisms at Imperial College London, listed on FindAPhD.com

findaphd.com
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Radina Georgieva retweeted
Damir Baranašić@CroBeaver2 Aug 2023
🧬🌱 Using zebrafish as your model organism? 🐟🔍 Uncover a treasure trove of genomic resources to boost your studies! 📚🔬 Check out our new paper to explore innovative insights for disease modelling and regeneration. #Zebrafish #Genomics 🔗journals.biologists.com/dmm/…

Zebrafish regulatory genomic resources for disease modelling and regeneration

Summary: Regulatory genomics resources for zebrafish need to be expanded to fulfil this model's potential in exploring the genetics of human disease. Bulk and single-cell genomics resources offer...

journals.biologists.com
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Less than a week left to apply for the postdoc position in our lab! Details below:
Boris Lenhard@BorisLenhard10 Jul 2023
Join us! We are seeking a PhD student and a Postdoc for in-depth study into promoter architectures, evolution of regulatory elements, and enhancer-promoter compatibility. Please get in touch and/or RT! Postdoc: tinyurl.com/2bw8n4h2 PhD student: tinyurl.com/ryvw5f5m
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Radina Georgieva retweeted
George Young@its_GeorgeYoung25 Jul 2023
I'm recruiting a Senior Bioinformatician to join the @MRC_LMS Bioinformatics Facility. New building, new HPC system, new start! Know your way around *seq workflows, like Nextflow, love reproducible science ... get in touch! #Bioinformatics #jobs #London
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Radina Georgieva retweeted
Melanie Conrad@MLConradLab18 Jul 2023
Elsevier's revenue: £2.9 billion. WTF? We scientists produce the content for manuscripts and review for free. Then we pay huge fees for open access publishing. Science should not be business. What on earth can we do to fight against this? theguardian.com/science/2023…

‘Too greedy’: mass walkout at global science journal over ‘unethical’ fees

Entire board resigns over actions of academic publisher whose profit margins outstrip even Google and Amazon

theguardian.com
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Join our team to work on some of the most exciting questions in regulatory genomics! 🧬💻 @MRC_LMS @GroupLenhard
Boris Lenhard@BorisLenhard10 Jul 2023
Join us! We are seeking a PhD student and a Postdoc for in-depth study into promoter architectures, evolution of regulatory elements, and enhancer-promoter compatibility. Please get in touch and/or RT! Postdoc: tinyurl.com/2bw8n4h2 PhD student: tinyurl.com/ryvw5f5m
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Radina Georgieva retweeted
Fabio Crameri@fcrameri14 Jun 2023
Scientific colour maps 8.0 fabiocrameri.ch/colourmaps #useBatlow #ScientificVisualisation #visualisation #Science #ColourPalette #DataVis #GraphicDesign #OpenSource #Accessibility #Colour #AcademicCommunityContribution #ACC 1/n
Entire suite of Scientific colour maps (perceptually uniform and color-blind friendly), with hand-pickable colours of discrete and categorical colour palettes.

ALT Entire suite of Scientific colour maps (perceptually uniform and color-blind friendly), with hand-pickable colours of discrete and categorical colour palettes.

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As 'Time Shelter' becomes the first book translated from Bulgarian to win the International Booker Prize, here’s everything you need to know about the novel. #InternationalBooker2023 thebookerprizes.com/the-book…
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Such a great book! theguardian.com/books/2023/m…

International Booker prize announces first ever Bulgarian winner

Georgi Gospodinov’s Time Shelter, translated by Angela Rodel, portrays a ‘clinic for the past’ and was praised as a ‘great novel about Europe’

theguardian.com
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Radina Georgieva retweeted
Damir Baranašić@CroBeaver16 May 2023
Exciting collaboration within @MRC_LMS, led by the Genomics of Obesity group with @GroupLenhard, and @BorisLenhard, reveals the role of DNA methylation in obesity and diabetes in a groundbreaking study in @NatureComms. Check it out: nature.com/articles/s41467-0… #ObesityResearch 1/8 🧵
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Check out the latest preprint from @GroupLenhard shedding light on the capping of 3'UTR RNAs 👇 Congrats @NejcHaberman et al. !!
This Post is from an account that no longer exists. Learn more
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Promoter sequence architectures in #Drosophila melanogaster at 6-8h AEL Data from nature.com/articles/ng.3791 Architectures identified with seqArchR bioconductor.org/packages/se… seqArchR preprint biorxiv.org/content/10.1101/…
Promoter sequence architectures in #Drosophila melanogaster at 6-8h AEL

ALT Promoter sequence architectures in #Drosophila melanogaster at 6-8h AEL

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Radina Georgieva retweeted
Lenhard group@GroupLenhard8 Mar 2023
#InternationalWomensDay Great occasion to share this news Many congratulations to our recently graduated PhD student, now Dr. Radina Georgieva @radinagg @BorisLenhard @GroupLenhard @MRC_LMS @imperialcollege
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seqArchR is finally out! Impressive work by my colleague @sarveshnikumbh @GroupLenhard
Sarvesh Nikumbh@sarveshnikumbh6 Mar 2023
Happy to introduce *seqArchR*, an approach using non-negative matrix factorisation (NMF) for de novo identification of promoter sequence architectures. 1/7 biorxiv.org/content/10.1101/…
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Radina Georgieva retweeted
Boris Lenhard@BorisLenhard1 Feb 2023
Come to @MRC_LMS to work with @louise_fets, with my proud assistance, on a great project that aims to understand and model transport of multiple drugs in tumour cells.
Louise Fets@louise_fets1 Feb 2023
Job Alert🚨🚨 My lab @MRC_LMS has a 3y postdoc position available for a computational biologist/mathematical modeller to work on a @CRUKresearch funded #drugtransport project, in collaboration with @BorisLenhard. Please RT/DM for details! @imperialcollege imperial.ac.uk/jobs/descript…
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Radina Georgieva retweeted
ENHPATHY@enhpathy_H20208 Dec 2022
Check out our Perspective in @NatureSMB highlighting 7 challenges to be considered in the study of enhancer dysfunction in disease. 👏 @zauggj @robin_andersson @SahlenPelin & @S_Spicuglia for coordinating this work. @MSCActions ➡️ rdcu.be/c1f7d
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