computational biology; genomics; @Bioconductor; @FMIscience; „Heimwehwalliser“
Basel, Switzerland
Joined January 2013
- Tweets107
- Following80
- Followers196
- Likes280
Michael Stadler retweeted
💫 We're hiring! The Computational Biology Facility is looking for a Computational Proteomics Scientist to collaborate on cutting-edge proteomics projects, develop new analytical approaches, and publish impactful research.
Apply by April 12 at: fmi.ch/education-careers/pos…
Michael Stadler retweeted
The Proteomics Platform at the FMI is seeking a skilled Proteomics Specialist who is passionate about cutting-edge technologies in multi-disciplinary projects.
Apply by November 30, 2024 at fmi.ch/education-careers/pos…
Michael Stadler retweeted
This event was great fun and a fantastic opportunity for the lab to showcase our new palm-sized LIF neurons, which our collaborators @sbillaudelle, @NeuroTMA et al. from Heidelberg University built for education. The students (and teachers) loved it!
zenkelab.org/2024/06/high-sc…
Last week, we hosted 100+ high-school students, who learned more about biomedical research, explored career opportunities & enjoyed fun hands-on activities. Thanks to all FMI volunteers for helping to inspire future scientists! Read more about the event: bit.ly/TageDerGenforschung24
Michael Stadler retweeted
We are very excited to present a major breakthrough achievement – the de novo design of synthetic enhancers for selected tissues in fruit fly embryos in vivo using deep- and transfer learning, @deAlmeida_BPet al published today in @Nature nature.com/articles/s41586-0…. Thread 👇(1/N)
Michael Stadler retweeted
**We are moving platforms**
Bioconductor will cease posting on Twitter/X as of December 17, 2023.
Instead we will be continuing to post on other social media platforms that better reflect our community’s code of conduct.
Read more in our blog post: buff.ly/3RddEAV
ALT Bioconductor exit from Twitter post reminder
Michael Stadler retweeted
The winners of the Ruth Chiquet Prize are Charlotte Soneson from our Computational Biology platform and @seebj from our Proteomics platform for jointly developing an R package for the statistical analysis of proteomics data: joss.theoj.org/papers/10.211… Congratulations!
#FMIAM2023
Michael Stadler retweeted
As usual, I forgot to fill the @Bioconductor form for the official #speaker spotlight, so here I am telling you that today (21) at 13:30 I’ll give a short #workshop (45 mins) about Differential Accessible Regions detection in 10xGenomics #multiome #ATAC data.
#EuroBioc2023 – at Ghent, Belgium
Michael Stadler retweeted
einprot: flexible, easy-to-use, reproducible workflows for statistical analysis of quantitative proteomics data biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
Michael Stadler retweeted
Congratulations to @LucaGiorgetti! The FMI senior group leader is among 69 newly elected @EMBO Members this year. Eight other group leaders currently at the FMI are EMBO members.
fmi.ch/news-events/articles/…
Michael Stadler retweeted
📢 Registration is now LIVE for #EuroBioC2023 in Ghent. Don't miss out, secure your spot today! 👉eurobioc2023.bioconductor.or…
#Bioinformatics #Rstats
📣 The EuroBioC 2023 schedule is now live! 🎉
Check out our exciting lineup of sessions and speakers at buff.ly/3MIdJsD
We can't wait to see you in Ghent 🇧🇪 in September!
#EuroBioC2023 #Bioinformatics #Rstats
ALT Screenshot of EuroBioc2023 schedule Day 1
ALT Screenshot of EuroBioc2023 schedule Day 2
ALT Screenshot of EuroBioc2023 schedule Day 3
Do you analyse Multiplexed Assays of Variant Effect (MAVE) data? Maybe our recent R package `mutscan` could be of interest to you (github.com/fmicompbio/mutsca…, paper: doi.org/10.1186/s13059-023-0…). Thanks to @CSoneson, @AlexBendel_ and @Guillaune_Diss for the wonderful collaboration!
Michael Stadler retweeted
🎓 Upcoming #biocsmorgasbord! Learn "RNA-seq analysis with Bioconductor" 🧬💻 with Charlotte Soneson @CSoneson and Jenny Drnevich
📅 May 22-26
➡️ buff.ly/41iwsjZ
#Bioinformatics #rstats
ALT Screenshot of RNA-seq analysis with Bioconductor tutorial
Michael Stadler retweeted
📢We're hiring! The FMI is seeking to recruit a Head of #IT to lead an interdisciplinary team of IT specialists and shape the institute's IT strategy.
For more info and to apply: bit.ly/42hqQr9
Deadline: 31st May 2023
#ITJobs
Michael Stadler retweeted
📣 Bioinformatics enthusiasts! You've got an extra week to submit your #EuroBioc2023 abstract! 🚀 Deadline extended to April 24th, 5pm CEST.
Don't miss the chance to showcase your work and connect with the community! 🤝
#Bioinformatics #Genomics #RStats
📣 Abstract submission is open for #EuroBioC2023 conference in Ghent 🇧🇪 Sep 20-22 eurobioc2023.bioconductor.or… !
Submit an abstract by April 14 for
Short talk
Software demo
Poster
Contributed session
BOF session
👉 Submit here openreview.net/group?id=bioc…
#rstats #Bioinformatics
ALT A screenshot of the EuroBioc2023 website showing the conference dates and hex sticker.
Michael Stadler retweeted
Still a few days left to submit your abstract to #EuroBioC2023 ..
📣 Abstract submission is open for #EuroBioC2023 conference in Ghent 🇧🇪 Sep 20-22 eurobioc2023.bioconductor.or… !
Submit an abstract by April 14 for
Short talk
Software demo
Poster
Contributed session
BOF session
👉 Submit here openreview.net/group?id=bioc…
#rstats #Bioinformatics
ALT A screenshot of the EuroBioc2023 website showing the conference dates and hex sticker.
Michael Stadler retweeted
Out today! An analysis from @const_ae and @wolfgangkhuber compares different transformation approaches for the analysis of single-cell RNA-seq data and provides recommendations for method selection.
nature.com/articles/s41592-0…
Michael Stadler retweeted
This is pretty slick — query with an accession and directly download actual read files (with preference for SRA or ENA) directly in @rpetit3's fastq-dl github.com/rpetit3/fastq-dl; all wrapped up in a nice "rich" interface :).
Michael Stadler retweeted
🗣️Please RT: Applications for our #PhD and #MD-PhD programs are now open! Based in Basel, Europe's top #lifescience hub, we offer interdisciplinary training in neurobiology, multicellular systems and genome regulation.
📅Apply by May 1 at bit.ly/FMIspring2023
#AcademicTwitter
Michael Stadler retweeted
🚨📢 On March 8th, the Bioconductor Core Team will rename the default branch on `git.bioconductor.org` from `master` to `devel`.
For more details, see the
1. Blog post bioconductor.github.io/biocb…
2. Branch Rename FAQ
contributions.bioconductor.o…
ALT Screenshot of blog post on the renaming of Bioconductor default branch from master to devel
Michael Stadler retweeted
📣 Abstract submission is open for #EuroBioC2023 conference in Ghent 🇧🇪 Sep 20-22 eurobioc2023.bioconductor.or… !
Submit an abstract by April 14 for
Short talk
Software demo
Poster
Contributed session
BOF session
👉 Submit here openreview.net/group?id=bioc…
#rstats #Bioinformatics
ALT A screenshot of the EuroBioc2023 website showing the conference dates and hex sticker.