biophysics, cytoskeleton and self-disorganization
Utrecht, NL
Joined September 2008
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- Followers1.7K
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Eugene Katrukha πΊπ¦ retweeted
What is the difference between a growing and shortening microtubule end? I thought I knew the answer until I started talking to @maxotubule and @KalutskiyMaksim. Turns out the key are protofilament clusters - check out our preprint for details biorxiv.org/content/10.1101/β¦
Eugene Katrukha πΊπ¦ retweeted
Have you ever analyzed a #microscope image before- even just a single one? Please take our survey on progress and places to still improve for image analysis software! #microscopy #imageanalysis #bioimageanalysis forum.image.sc/t/2024-image-β¦
Eugene Katrukha πΊπ¦ retweeted
.@yuhao_han, GrΓΌnewald, @MarinaMikhaylo8 @HumboldtUni et al. use primary hippocampal cultures to demonstrate that neurons with axon-carryingβdendrite (AcD) morphology can develop independent of an in vivo environment. hubs.la/Q02WP-Fw0
@christlet #Neuroscience #Polarity
Eugene Katrukha πΊπ¦ retweeted
Pre-release bundles available at downloads.imagej.net/fiji/fuβ¦ β still working on fixing a few things, which is why I haven't pushed the option to update to all Fiji users yet.
Eugene Katrukha πΊπ¦ retweeted
Virtual I2K starts TOMORROW, Monday the 28th! 34 FREE sessions, 900+ registrants so far. Learn more about favorite #bioimageanalysistools or find your next fav! i2kconference.org/virtual
Please also help our community improve by filling out our survey - forum.image.sc/t/2024-image-β¦
ALT A green and magenta fluorescence microscopy image of kelp blades, next to text saying "Virtual I2K2024: Online Tutorials on Image Analysis. October 28-30, 2024. Virtual Conference for beginners to developers. i2kconference.org for more info .
Eugene Katrukha πΊπ¦ retweeted
How diverse is protein localization to human primary cilia? Check our study revealing incredible cell-type and single-cell diversity:
biorxiv.org/content/10.1101/β¦
3 year effort of studying 1935 proteins with imaging - 654 ciliary proteins pictured!
Tweetorial by @Prof_Lundberg & β¬οΈ
Iβm very excited to finally present something weβve been working on for the past couple of years β a spatial proteome map of primary cilia, released in @ProteinAtlas today. Amazing teamwork led by @jn_hansen
Check out our preprint doi.org/10.1101/2024.10.20.6β¦
Eugene Katrukha πΊπ¦ retweeted
Announcing CT Foundation, a new medical imaging embedding tool that accepts a computed tomography (CT) volume as input and returns a small, information-rich numerical embedding that can be used to rapidly train models. Learn more and try it out yourself β goo.gle/4dYkClf
Eugene Katrukha πΊπ¦ retweeted
Microscopy Nodes 2.0 is out! This includes a new channel interface and OME-Zarr support! π¬π
youtube.com/watch?v=ybQcKEqUβ¦
Eugene Katrukha πΊπ¦ retweeted
π Thrilled to announce #inTRACKtive: a web-based tool for exploring massive cell-tracking datasets, no software installation required! Just open your browser and dive into terabytes of developmental biology data. We used it to build the virtual embryozoo.org of tracked embryonic development datasets ππͺ°πͺ±πͺ²π , but you can also use it for your own data! π¬
Preprint:
biorxiv.org/content/10.1101/β¦
Repository:
github.com/royerlab/inTRACKtβ¦
This project was spear-headed by @TeunHuijben, together with engineers Andrew Sweet and @aganders3 from @cziscience
@czbbiohub #CZBiohubSF #devbio #tracking #web #visualization
π§΅1/n
Eugene Katrukha πΊπ¦ retweeted
2/ π Zebrahub-Multiome offers interactive data exploration via CZ #CellxGene and interactive figures powered by #Streamlit. Dive into the time-resolved and cell-type-specific complexities of chromatin accessibility and gene regulatory networks during zebrafish embryogenesis with unprecedented detail!
zebrahub.sf.czbiohub.org/epiβ¦
#zebrahub #grn #devbio
Eugene Katrukha πΊπ¦ retweeted
Experiment of thought for the microtubule crowd.
Behind is the question: by sequestering free tubulin, does nocodazole simply block microtubule assembly (and let the old disappear first as they should) or does it reverse it (killing the young)?
Eugene Katrukha πΊπ¦ retweeted
Wonderful news! Parafilm M rules!
Very well-deserved recognition after helping so many other #NobelPrize winners achieve their breakthroughs! Congratulations @ParafilmM
Eugene Katrukha πΊπ¦ retweeted
This clip is a segment from a longer #neuroscience educational video I made combining #neuro history, remixing other #connectomics datasets, in an attempt to share my appreciation for the complex circuitry in real #brains, and excitement for the future.
youtu.be/VPaxhoRgqgU
Eugene Katrukha πΊπ¦ retweeted
Since the '50 largest neurons' #connectome render with @amyneurons @FlyWireNews has made it's way around the world, I'm sharing an animated version. Including:
Information flow from the ocelli,
50 largest #neurons,
and a LOT of #synapses on one MASSIVE neuron.
#neuroscience
Eugene Katrukha πΊπ¦ retweeted
Hello everyone, excited to share our preprint: biorxiv.org/content/10.1101/β¦
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Everyday, cells like this crawl through your body to protect you. While we know that their front π΄ and back π΅ polarity programs work together, how exactly do these two processes communicate? Lets chat!
Eugene Katrukha πΊπ¦ retweeted
Big news! The fly connectome is featured on the cover of a special edition of Nature.
This is all possible thanks to the collaboration of 292 members of The FlyWire Consortium!
nature.com/immersive/d42859-β¦
Check out the thread for an overview of the 9 #flywire papers published today
Eugene Katrukha πΊπ¦ retweeted
Our paper is out!!! (well already 3 months ago) π¬π§«
A project spearheaded by @sravmukherjee and a very fun almost detective novel like story. Check it out!!! We also managed to put a pun in the title π
small thread below π
cell.com/iscience/fulltext/Sβ¦
Eugene Katrukha πΊπ¦ retweeted
Now on arxiv ! With Amir Khosravanizadeh, we were interested in a (seemingly) simple problem : how a filament glides on a bed of motors, when it is anchored at one end.
As one may have expected, sometimes we see the filament gliding as a spiral
Eugene Katrukha πΊπ¦ retweeted
1/ I'd like to share a short thread about our project to build a nationwide, distributed core-facility for bioimage analysis. We discuss this in our recent preprint:
arxiv.org/abs/2409.15009
