Scientist, data visualization, neuroscience Quorumetrix Studio: Data-driven motion design and 3D renders

Montréal, Québec
Joined February 2014
New #portfolio reel showcasing a few favorites over the years, revisited for a new look. Currently open to new clients and collaborators, short or long-term. RTs appreciated to help spread the word! #sciencetwitter #neuroscience #scicomm #motionGraphics #dataviz #b3d #sciart
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What if any dataset, any size, any number of dimensions, opened in a browser tab from a link? 🔬🧪💻 Luxar is out today: write it in Python, share it as a link, explore it in any browser. Open source. 🧵 @biohub
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This is a lesson for people like myself who have invested years into technical specialization. This forces you to keep adapting and fight to stay at the leading edge of what's possible. I'm constantly reinventing my process and pipelines to improve. Rising tides lift all boats
Replying to @karpathy @drewvolpe
I’ve been blown away by LLM interactive 3D and animation lately. The barrier to build is approaching zero. amyleesterling.github.io/mic…
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a high level view of a section of human brain - should every connectomics dataset have an explorer like this? amyleesterling.github.io/hum…
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Thanks @emilysinger at @_TheTransmitter for talking to me about this show and my vision of using #planetarium domes for #neuroscience outreach. We have the passionate volunteers, they have the #scicomm infrastructure, let's make collaborations easier. #fulldome #scivis
Over the past few years, Tyler Sloan @quorumetrix has been working on bringing neuroscience to the dome. His new planetarium film, more than a decade in the making, takes viewers on an immersive journey into the brain. thetransmitter.org/art-in-sc…
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Experimental visualization for the general public to explore h01 human EM connecomics dataset and human connectome project tractography. In browser, on a phone. What other data should I try? Working demo: amyleesterling.github.io/hum… @GoogleAI @MCB_Harvard
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Brain and body!
Just published yesterday, the #BANC! A full central nervous system (CNS) connectome of a limbed animal enables us to trace sensory-motor arcs and understand how the CNS controls the body. rdcu.be/fncjS #neuroscience @Nature, Video by @quorumetrix, sound on! 1/18
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This is such a fascinating paper, I really felt like I came out with a deeper understanding of how nervous systems are organized. Check out the video, and you'll want to read more! #neuroscience #visualization #connectomics #BANC
Just published yesterday, the #BANC! A full central nervous system (CNS) connectome of a limbed animal enables us to trace sensory-motor arcs and understand how the CNS controls the body. rdcu.be/fncjS #neuroscience @Nature, Video by @quorumetrix, sound on! 1/18
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I've said it before and I'll say it again. Astrophysicists won the long game of engaging science communication
Coming soon: one of history’s most complex missions Tune in on Tuesday, June 9, at 11am ET, to meet the astronauts flying aboard Artemis III, the mission that will test docking capabilities with commercial landers in low Earth orbit — an important step to crewed lunar landings.
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Twitter is back, baby
Thanks Anil, and you are correct. I do not know what you think. I do generally know what you write, that you are an authority in brain and consciousness studies, speak very well (you should do Shakespeare), straddle fences nimbly, and don’t commit to conscious AI through neuronal computation. You do favor ‘biological naturalism’ to explain consciousness, but don’t say what that is. Here’s the thing. Though you’ve never mentioned Orch OR, it is the only biologically natural theory of consciousness. Put forth by Sir Roger Penrose and myself in mid 90s, it was one of 5 ‘major’ theories of consciousness (GNW, IIT, HOT, PC/RP, Orch OR) in the TWCF program beginning around 2018. It was selected despite being consistently criticized because quantum effects seemingly need extreme cold to avoid decoherence, loss of quantum states before quantum processes necessary for consciousness to occur. How long is that? We claim 10^-12 to 10^-6 secs would suffice (with interference beats getting down to, and BEING the EEG). In the TWCF program we could not agree with proponents of other theories for an adversarial collaboration. They are all at levels of complex computation of simple neurons. We focused on microtubules inside neurons where anesthetics are known to organize activities, process information and mediate anesthesia. For TWCF we predicted 1) room temperature quantum states in microtubules which could be functional 2) those quantum states would be inhibited by anesthetics. Both were shown. Aarat Kalra working in Greg Scholes lab at Princeton used UV fluorescence at ambient temperature to trigger propagating excitons in microtubules 6.6 nm over 8 nanoseconds, both requiring quantum states. They were dampened by two types of anesthetic. We ‘called our shots’. pubs.acs.org/doi/10.1021/acs… Correct me if I’m wrong but overall the TWCF program over 8 years spent $30 million dollars and produced only this one significant positive result for Orch OR for a measley $100k. You do hold yourself up as an authority. In 2022 you and Tim Bayne wrote a review of theories of consciousness for Nature Neuroscience Reviews with extensive discussion of the other 4 original TWCF theories, mentioning Orch OR only in a list of 20 others. I asked you about it and sent this paper pubmed.ncbi.nlm.nih.gov/3578… You said you would read it and comment but never did. You Tweeted you’d do so for the new Theories of Consciousness -The Grand Tour book in which I have a chapter. But you didn’t. And what biological naturalism theory is there other than Orch OR? I probably sound whiney but you’re dodging Orch OR. Maybe I’m paranoid but you and other neuro-influencers like Dave and Christof suppress and ignore Orch OR, and have for years. Why? Is it funding from conscious Al proponents? Or… you just don’t like me? (I have been a bit obnoxious with pushback). Are you ‘quanta-phobic’? The evidence is on our side academic.oup.com/nc/article/… Quantum biology is booming, neurocomputational approaches are flailing. Warm temperature quantum gel quantum computers based on Orch OR are on their way iopscience.iop.org/article/1… So that’s what’s going on. You’ve been obstructing progress in my view. Depriving the public of important knowledge. There’s a whole new world inside the neuron. The tide has turned. I thought you’d want to know.
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2 years ago the city had to fell a massive maple that had dying and dropping large branches on my family. I know how important they are to biodiversity, so I turned its carcass into what I'm calling a #biodiversity fountain. The neighbors love me.
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1/ 🚀 Excited to release: napari-mcp - agentic control of napari from any MCP-capable AI assistant! Use it for interactive image processing, analysis, and visualisation! Really cool project from @ilan_theodoro in my team! #napari #bioimageanalysis #MCP @biohub
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Microscopy nodes has become the go-to tool for volumes in Blender
Open-source 3D non-scientific graphics software Blender adapted to integrate light & electron microscopy data by a Python extension called Microscopy Nodes 📹 Aafke Gros et al @embl in @emboreports ➡️ bpod.org.uk/archive/2026/3/2…
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Here's an #visualization of the visual processing in the flies eye, one of the most beautiful structures in nature. First we see photoreceptors in red and blue, camera spins showing columnar circuitry for processing the 'pixels' of the visual field (from flwire.ai)
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Lots of interest in #connectome whole brain #emulation this week. This is such an exciting area. Re-posting an old animation I made using the connectome of the flies eye with a spiking #neuron simulation #neuroscience #visualization
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Tyler Sloan retweeted
Replying to @E11BIO
@E11BIO is hiring a Machine Learning Scientist at the intersection of neurobiology and large-scale microscopy image analysis. If you work in synapses, neurons, and biological ground truth — not just benchmarks — then please apply. lnkd.in/gr9-zbsa
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Tyler Sloan retweeted
We just sped up image analysis for a key part of hearing loss research by 50-fold. 🚀👂 Excited to announce our latest paper in PLOS Biology: "VASCilia," an open-source AI tool that revolutionizes how we visualize and analyze cochlear hair cells. The Bottleneck: For years, quantifying the 3D morphology of stereocilia bundles has been a manual, labor-intensive process—taking minutes per cell and slowing down critical research into hearing loss, aging, and noise damage. The Solution: VASCilia. Developed by Yasmin Kassim and our team at UC San Diego School of Biological Sciences, this napari plugin uses deep learning to automate the 3D segmentation and analysis of hair cells. Key Breakthroughs: ✅ Speed: Accelerates analysis by 50x compared to manual methods. ✅ Superhuman Vision: Quantifies "texture" and cellular disorganization to detect subtle defects human eyes miss (critical for tracking disease progression). ✅ 3D Precision: "Unrolls" the cochlea to predict tonotopic position and measures bundle height/intensity in full 3D. ✅ Accessible: No coding skills required! Huge congratulations to first author @Yasminkassim3  and the entire team for building a tool that we hope will serve the entire hearing research community in both industry and academia. Many thanks to National Institute on Deafness and Other Communication Disorders, Chan Zuckerberg Initiative, MATHERS FOUNDATION, and National Science Foundation (NSF) for funding support, and also our wonderful collaborators including @IndArtur and Rick Friedman, MD PhD. 📄 Read the paper: lnkd.in/g9NEpwhn 💻 Download the code: lnkd.in/gS4W7V_x
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The downside, they clipped out the credits. The upside, more people seeing real neurons. Net win.
This visualization of a cubic millimeter of mouse brain smaller than a grain of sand shows 75,000 neurons and pyramidal cells processing over 11,000 inputs at once.
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I have absolutely no idea who this is for, but just in case somebody wanted a holiday fireplace... but instead of a fireplace with burning logs it was actually neurons spiking with optical physiology data... then today is your lucky day. youtu.be/yRNtV90Y-_w
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Quorumetrix Studio year in Review: This year in Brain Science! (be sure to have the sound on, this was fun to make) youtu.be/GCQ8jeWwaEE
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