@intermineorg

Open source data warehouse system for the integration and analysis of biological data. From the Micklem lab at the @GeneticsCam

 Cambridge, UK
intermine.org
Joined April 2012
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We are delighted to announce a collaboration with the Database Center for Life Science (dbcls.rois.ac.jp/index-en.ht…) that includes them hosting the HumanMine (humanmine.org/) and FlyMine (flymine.org/) databases.
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HumanMine and FlyMine have been unstable for the last few days due to hardware problems - we are sorry about this and will fix as soon as we can.
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We are delighted to have our HumanMine article doi.org/10.1093/database/baa… published in the Database journal 🎉. Check it out to learn how to do powerful data exploration over biological data to gain new insights!
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This paper describes the @intermineorg take on building a Data Warehouse for the Human Genome. You won't be disappointed(!): HumanMine: advanced data searching, analysis and cross-species comparison biorxiv.org/content/10.1101/…

HumanMine: advanced data searching, analysis and cross-species comparison

HumanMine ([www.humanmine.org][1]) is an integrated database of human genomics and proteomics data that provides a powerful interface to support sophisticated exploration and analysis of data...

biorxiv.org
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InterMine retweeted
Wayne@Fomightez20 Apr 2022
Replying to @jomcinerney
Intermine (@intermineorg) offers an API for querying their 'mines' for several model organisms like human, mouse, fly, thale, and yeast see intermine.org/training-porta… and training.cam.ac.uk/bioinform… to get an idea
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🔧server upgrade on 🪛 Thursday 21 April 2022, 9-13 BST HumanMine and our @usejbrowse service will be down during that time. Apologies for the inconvenience!
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upgrade finished, HumanMine back to normal🙂
FlyMine 53 is out 🎉 flymine.org/flymine
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HumanMine 12 is out 🎉 humanmine.org
Delighted to be one of the DARE UK @UKRI @HDR_UK Sprint Exemplars: building federated AI approaches & IG models for child mental health with @intermineorg @bitfount @AFNCCF @KaleidoscopeIG @AIMESHealth @Tamsin_J_Ford @psychiatry_ucam bit.ly/3fh79Jh
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Do you know @intermineorg? It's an #OpenSource biological #data warehouse. Thanks to @NikhilVats_ it now features an option to download the Frictionless #DataPackage along with the results of any query. Read more: frictionlessdata.io/blog/202… #FrictionlessData #OpenData #BioData

Frictionless Data Package for InterMine

This blog is part of a series showcasing projects developed during the 2020 Tool Fund.

frictionlessdata.io
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Follow our #ELIXIRRIRs: @3DBIONOTES @BridgeDbProject @DisGeNET (RDF API) @FAIRsharing_org @fairtracks @IdentifiersOrg @intermineorg @isatools @molgenis @OmicsDI @plaza_genomics #BioImageInformaticsIndex #gprofiler #OntologyLookUpService @emblebi
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HumanMine 11 is out today 🎉 With additional data from @CancerDepMap 😀 humanmine.org/
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FlyMine release 52 is out 😀 Thanks to @Gilby519 of @FlyBaseDotOrg for his help in updating our FlyBase parser
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InterMine retweeted
Adrián@adrianbzg16 Sep 2021
I'm delighted to share our latest work published in Nature Sci. Reps (nature.com/articles/s41598-0…). In this paper we propose a deep learning-based system (Polyglotter), that in a general way supports the mapping of natural language searches to database queries. [1/5]

Translating synthetic natural language to database queries with a polyglot deep learning framework

Scientific Reports - Translating synthetic natural language to database queries with a polyglot deep learning framework

nature.com
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ELIXIREurope: NEWS Schema.org releases a new version with ❺ @BioSchemas types for representing life sciences data A big step towards improving #findability of life sciences web resources @SSirarat @egonwillighagen @gray_alasdair #FAIRdata #…
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HumanMine release 10 is out with the added data source @DisGeNET for disease associations😀. humanmine.org/humanmine
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An amazing post about @tinycosmoSpks #outreachy internship working on UX design for BlueGenes last year. A highly recommended read if you missed it! medium.com/intermine/summer-…

Industry Experience: Summer summed up!

🚀 Highlights from my first industry experience as a UX design intern

medium.com
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FlyMine and HumanMine are now running the new InterMine interface. Check it out! flymine.org and humanmine.org #software #database #opensource #biology #data
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