@fairtracks

Mobilising the wealth of genome sequence-mapped data through consolidated #FAIR metadata and connected services. Towards an RDA working group as #RDATIGER pilot

fairtracks.net
Joined February 2021
  • Tweets92
  • Following157
  • Followers53
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Will you help us mobilise the abundance of Functional #Genomics Data for #FAIR reuse in the age of #Pangenomes and #AI? #RDATIGER and #FAIRtracks invites across #biomedical and #biodiversity domains to launch a new WG in @resdatall . Kickoff Sep 12 & 25: tinyurl.com/rda-fair-tracks
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We are excited to announce the new JASPAR 2024 tracks for hg19, hg38, mm10, and mm39 which represent genome-wide predicted binding sites for transcription factors with binding profiles in the JASPAR CORE collection (@jaspar_db). Learn more at bit.ly/JASPAR2024
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We are proud to announce a new hg38 track group consisting of @HumanPangenome data. In this first release, there are tracks displaying features and variations of HPRC results compared to hg38, as well as alignment tracks. See the full announcement: bit.ly/HPRCdataInUCSCgenomeB…
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As the #InternationalDataWeek2023 approaches, what can you learn? What are the community benefits? Hear about it first hand from our @resdatall/@EOSCFuture Domain Ambassadors in this video filmed at #RDAPlenary 20 youtube.com/watch?v=uMp4oyH6…

RDA Ambassadors at the Plenary 2023

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Thank you Ryan and the others in #RDATIGER for your ongoing facilitation of the "FAIRification of Genomic Annotations" working group initiative: tinyurl.com/rda-fair-tracks
RDA Europe@RDA_Europe26 Sep 2023
The newest addition to the RDA EU team and #RDATIGER Senior Facilitator Ryan O'Connor is at the #OSFAIR2023 this week showcasing @resdatall, its groups and outputs, and how #RDATIGER can support the internationalisation of your projects!
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Eivind also took the initiative for the FAIRtracks project (+The Genomic HyperBrowser statistical analysis framework, back in 2005 or so)! Congratulations!🎂🥳 Btw: please register to the #2 kickoff for our new #rda working group, Sept 25, UTC 2-3:30pm: tinyurl.com/rda-fair-tracks
ELIXIR Norway@elixirnorway18 Sep 2023
🎉 Happy 70th Birthday to Eivind Hovig! 🎂🥳 Your outstanding contributions to #bioinformatics have paved the way for groundbreaking research in Norway and beyond. 🧬🇳🇴 Your dedication and expertise are invaluable to us, @UniOslo, @UiO_LifeSci & @Oslounivsykehus. 🏆🔬
portrait photo Eivind Hovid

ALT portrait photo Eivind Hovid

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Second half of the poster for the new #RDATIGER & #FAIRtracks initiative for a new working group in the Research Data Alliance (RDA): "FAIRification of Genome Sequence Annotations" Kickoff Sep 12 & 25: tinyurl.com/rda-fair-tracks
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🧬👩‍🔬Registration for the @EuroFaang Ontology Improvement Workshops is open: cutt.ly/5wfjVqIx 🔬 @emblebi will be hosting 2 virtual workshops🖥️ on utilising the new Ontology Improvement Tool within the FAANG Data Portal. 👀More information: cutt.ly/KwfjVc57
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In particular, check out the birds-of-a-feather session “FAIRification of Genomic Tracks” of the #RDAplenary: rd-alliance.org/fairificatio… More info will come soon!
Research Data Alliance (RDA)@resdatall16 Aug 2023
New to the RDA? Still not sure about attending the #RDAPlenary 21 in #Salzburg? Register for one of webinars to learn more about the RDA community, how to get involved, and make the most of the P21. 🌏 World friendly webinar times bit.ly/3QurkYh
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FAIRtracks retweeted
Ensembl@ensembl16 Aug 2023
#Ensembl is excited to be part of the @BGAcademy23 🌍 🧬 🐏 🦅 🪲 🪸 @jgperezsilva will be showing participants how genomes are annotated the ✨Ensembl-way✨ 👨🏻‍💻 More info on the #BGA23 website: buff.ly/43tnn8X
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Next week! De-mystifying the Research Data Alliance: Learn what it is, how it works and how to get involved. 🗓️22 August 2023 🕙10:00 - 11:00 UTC Introducing newcomers to RDA and the particular benefits for the Irish community. More info and register: tinyurl.com/3jra5an9
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We are excited to share a new paper in preprint that shares the latest #genome assembly pipeline used by the Vertebrate Genome Project in Galaxy! This new pipeline is freely #accessible through Galaxy and can be run in just a few clicks! Read here: tinyurl.com/2p97ejr3
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We are happy to announce the addition of a new assembly hub, Sunflower Sea Star, to the Public Hubs page. Browse through this assembly hub today: tinyurl.com/5dzastu9 @Revive_Restore @MNDlab @LMSchiebelhut @MelissaDeBiasse @katharina_hoff
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FAIRtracks retweeted
GA4GH@GA4GH17 Jul 2023
It's official: #refget v2.0 is the next GA4GH standard. bit.ly/3XTm4z1 This API for reliably finding the right reference sequence powers all #CRAM files. v2.0 users include GA4GH VRS, @ENASequence, and soon @ensembl. Thanks to @emblebi's @tcezard & @enscore and the team!
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We’re at the International Congress of Genetics and Genomics in Melbourne! If you are interested in helping us bring about uniform search for genome annotations, or tracks, please come over for a chat. I will be presenting poster #224 tomorrow 12-14. #ICG2023
International Congress of Genetics 2023@Genetics202320 Jul 2023
Billions of dollars go into research projects that generate large amounts of publicly available genomic data, says Sveinung Gunderson @UniOslo_MED - now @fairtracks wants to bring it all together. #icg2023 @Genetics2023 @fairtracks fairtracks.net/
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Come to booth 27 at #ICG2023 to hear about the resources we have available such as @GalaxyAustralia, @ARGA_Genomes, Apollo and Fgenesh++ services, and our #bioinformatics training program - including recordings of all our webinars on youtube! biocommons.org.au/services

Services — Australian BioCommons

biocommons.org.au
Anna MacDonald@Dr_AnnaM19 Jul 2023
Jeff Christensen, Deputy Director of @AusBiocommons, telling the @GeneticsAus AGM about national bioinformatics infrastructure support genomics: lots of resources available to (and subsided for!) Australian researchers. Check out Aus BioCommons website or booth for more info.
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FAIRtracks retweeted
Andy Yates@enscore17 Jul 2023
This has been a long road since our PR was opened 4th March 2020. I am immensely proud of the work that's gone into refget from its origins in the CRAM Reference Registry to now as a foundational standard in genomics. Thank you to all who have contributed
GA4GH@GA4GH17 Jul 2023
It's official: #refget v2.0 is the next GA4GH standard. bit.ly/3XTm4z1 This API for reliably finding the right reference sequence powers all #CRAM files. v2.0 users include GA4GH VRS, @ENASequence, and soon @ensembl. Thanks to @emblebi's @tcezard & @enscore and the team!
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We are happy to announce the release of the Highly Reproducible genomic regions for sequencing for the human (GRCh38/hg38) genome assembly, which is part of the Problematic Regions supertrack. Learn more about this release from the following news post: genome.ucsc.edu/goldenPath/n…
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we are proud to be part of this
ELIXIR Europe@ELIXIREurope21 Jun 2023
📣 ELIXIR has renewed its collaboration strategy with @AusBiocommons! Both organisations work to 🙌 further #openaccess to resources to understand the molecular basis of life and have been collaborating for many years. Read the news 👉 elixir-europe.org/news/ABC-E…
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FAIRtracks retweeted
Ari Asmi@asmi_ari15 Jun 2023
Full room of #eosc projects in the coordination meeting. I am presenting the @RDA_Europe #rdatiger services 🐯 for potential users (prey?🐅). Trying to convince projects to open to outside of their immediate internal development toward global collab. Remove blinkers for a sec! – at Brussels, Belgium
Room full of project coordinators

ALT Room full of project coordinators

Horse blinkers (blinds). From Wikipedia cc2.0 (author: "Steve")

ALT Horse blinkers (blinds). From Wikipedia cc2.0 (author: "Steve")

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