Mathematician. Computational Biologist. Newsletter: https://xitter.cf/t.co/q3u5xgysOa
Joined October 2015
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Carlos Ronchi retweeted
New blog article challenging medical researchers who are drawn to clustering patients to create so-called "phenotypes" to think again: fharrell.com/post/cluster @MaartenvSmeden @statsepi0 #Statistics #PrecisionMedicine @vandy_biostat
Carlos Ronchi retweeted
Phenomenal work, tumor agnostic pipeline for oncology and precision medicine! ⬇️⬇️⬇️⬇️⬇️
@chronchi 's baby called #EMBER provides a calibration and reference tool that paves the way for using #RNAseq as a standard diagnostic and predictive tool for #ERpos breast cancer @CBrisken @epflSV #TCGA #METABRIC #SCANB #estrogen receptor signaling, cell #proliferation,
#DNA repair, and #epithelial-mesenchymal #transition
I’m very happy to announce that our manuscript has been published at npj breast cancer, together with @CBrisken and Syed Haider!
We propose a new algorithm to do single sample integration into a common reference space. (1/n) rdcu.be/dNeRN
Carlos Ronchi retweeted
Don't like p-values? We're presenting a completely new interpretation in the context of clinical trials. With Andrew Gelman, Sander Greenland, @guido_imbens Simon Schwab and Steve Goodman. @Lester_Domes @goodmanmetrics @NEJMEvidence
evidence.nejm.org/stoken/def…
Carlos Ronchi retweeted
Fantastic talk by @jcheng at #positconf2023 on using #shiny with #quartopub.
I've made an #rstats Quarto book demo with a wasm-embedded shiny app to demonstrate how class boundaries change with the complexity of natural splines.
Sources: github.com/topepo/shinylive-…
Carlos Ronchi retweeted
It's amazing to see our work so beautifully represented, thank you @sciencebrush!
Polarons and bipolarons in crystalline and amrophous polymer domains.
Excited to share this design 🎨 that I did for Prof. Natalie Banerji, first author Priscila Cavassin @CavassinP and colleagues from @DCBPunibern!
The work was published in Advanced Materials @AdvSciNews and looks at developing an organic electrochemical transistor based on a conjugated polymer film.
Carlos Ronchi retweeted
In new work, @LambdaMoses et al. introduce the Voyager platform for spatial and non-spatial 'omics analysis:
🚴♀️ Builds on the geospatial statistics tradition
🚴♀️ Addresses discordance between Seurat & Scanpy
🚴♀️ Engineered in R (@Bioconductor) & Python
biorxiv.org/content/10.1101/… 1/🧵
Carlos Ronchi retweeted
🔊Scientists can now utilize an optimized preclinical model for lobular breast carcinoma, which accurately reflects the different cancer stages. This tool can help advance lobular breast research @epflSV @sflomos @CBrisken @brisken @MHH_life👏
📌Link here: mdpi.com/2072-6694/15/13/329…
Carlos Ronchi retweeted
I am very happy to share our recently published work on the impact of morphology on the electrochemical doping of organic mixed ionic-electronic conductors. It’s part of my PhD journey and I am proud of it 🥳⬇️
onlinelibrary.wiley.com/doi/…
Carlos Ronchi retweeted
My book is done. I need to write a conclusion to the last chapter and will likely rewrite some paragraphs, but I won't make major changes anymore. So if you're interested in building reproducible analytical pipelines with #RStats, take a look it's free: raps-with-r.dev/
Carlos Ronchi retweeted
Carlos Ronchi @chronchi gave a fantastic presentation on “Computational biology in cancer prevention”, public outreach initiative
@ICPInews Olympic Museum @olympicmuseum for the occasion of World Cancer Day, a universally recognized day to raise awareness of cancer.
Carlos Ronchi retweeted
Check out this insightful preview by @chronchi @CBrisken on targeting the #progesterone receptor in #ERpositive #breastcancer: mind the short form! @CANCERPREV1 @BreastCancerNow @ICR_London @epflSV #mifepristone #PRB #PRA
aacrjournals.org/clincancerr…
Carlos Ronchi retweeted
Please RT: ER/E2/breast cancer. We are seeking #crowdsourced datasets and opinions. We curated 136 published datasets, processed with one pipeline and made a browser to visualize E2-induced expression and ER binding. Feel free to try it out estrogene.org/ 🧵
Carlos Ronchi retweeted
Infelizmente daqui a pouco vai começar a avalanche de preconceito contra pessoas do Nordeste, como em quase toda eleição presidencial
1, exibe o mau caratismo do preconceituoso; 2, ignora que o voto de cada cidadão brasileiro é igual e que limitar o voto do "outro" hoje(...)
Carlos Ronchi retweeted
On our way to Geneva to vote for Brazilian elections @chronchi. A critical day for our country's future #Eleicoes2022
Carlos Ronchi retweeted
Check out our #ESR @MSCActions Carlos Ronchi @chronchi; currently, a Ph.D. student at @EPFL working in @CBrisken lab #briskenlab great blog post on how to use #SQL and #MariaDB to organize wet-lab data chronchi.github.io/blog/2022… #PhD #AcademicChatter #sql
Carlos Ronchi retweeted
Today we begin a new series: “A Quarto tip a day keeps the docs away” -- a playful attempt to share Quarto tips daily for the next month. Follow along:
🐦 #quartotip
🔗 rstd.io/quartotip
And, of course, don't keep the docs away, they're incredibly helpful and thorough!
Carlos Ronchi retweeted
Great lineup of speakers in #Pollone
Paola ALLAVENA @HumanitasMilano Siobhan FREENEY @BreastDense Larissa CARNEVALI @ASTRAZENECAUK Anna Mandinova @mandinova @MassGeneralNews Holger Breithaupt @EMBO Stella de SABATA @IntDiabetesFed Enzo MEDICO @unito Pietro PRESTI @FTempia
Carlos Ronchi retweeted
We hereby announce the Breast Cancer Epigenomics Track Hub bchub.epfl.ch, a resource intended to make it easy to find, access and explore breast cancer epigenomics data from different labs. Try it or find more information in our recent preprint doi.org/10.1101/2022.05.01.4….
Carlos Ronchi retweeted
2nd annual @CANCERPREV1 meeting just started with exciting projects #psoriasis #topology #inflammation #SkinCancer #cachexia #breastcancer Giovanna Chiorino, Mikael Altun, Erwin Wagner, Wim DECLERCQ @CBrisken @JKaprio @dotto_ @homotopykat @emmyverschuren @MSCActions @CORDIS_EU
Carlos Ronchi retweeted
I couldn't be happier to see our comprehensive resource for Lobular Carcinoma Preclinical Models on the cover of @Cancers_MDPI open access journal. @oesterreichs @Adrianvlee @jjonkers2 @fitzpat_a @PWBDerksen @elbcc @CBrisken mdpi.com/2072-6694/13/21?utm…
