@cellbrowser

Interactive Single Cell Data Explorer and Data Repository Learn more: https://xitter.cf/t.co/BE8qg1pVuJ

 Santa Cruz, CA
cells.ucsc.edu/
Joined May 2022
  • Tweets93
  • Following389
  • Followers252
5Media
UCSC Cell Browser retweeted
UCSC Cell Browser@cellbrowser16 Oct 2025
With the government shutdown impacting GEO submissions, we're happy to help researchers share their single-cell data in the meantime. You can easily submit datasets here: cells-submit.gi.ucsc.edu/ We’re not a substitute for GEO, but an alternative tool for hosting and visualizing
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With the government shutdown impacting GEO submissions, we're happy to help researchers share their single-cell data in the meantime. You can easily submit datasets here: cells-submit.gi.ucsc.edu/ We’re not a substitute for GEO, but an alternative tool for hosting and visualizing
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🧠We've just add the Human Neural Organoid Cell Atlas to the UCSC Cell Browser! Come explore it here: hnoca.cells.ucsc.edu Big congratulations to ZhiSong He et al. and the whole team on this massive atlas!!!!👏 #singlecell #brainorganoids #developingbrain #neuraldisease
ZhiSong He 何志嵩@zhisong_he6 Oct 2022
So honor and excited as a part of the great team with @josch_f @SophieMJ_Jansen leaded by @TreutleinLab @GrayCampLab. In our @Nature study, we generated a #singlecell atlas of early #brainorganoid development, and studied regulations of cell fate decision nature.com/articles/s41586-0…

Inferring and perturbing cell fate regulomes in human brain organoids

Nature - A multi-omic atlas of brain organoid development facilitates the inference of an underlying gene regulatory network using the newly developed Pando framework and shows—in conjunction...

nature.com
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Congrats to Dr. Alison Cole @Alison20132006 for her recent publication in Frontiers in Zoology! Come explore the updated Nematostella V2 Atlas. 👇 sea-anemone-atlas.cells.ucsc…
Ulrich Technau@UlrichTechnau19 Mar 2024
Check out our updated single cell atlas of Nematostella, by @AlisonCole: doi.org/10.1186/s12983-024-0… It was completely remapped on the new chromosome scale genome and gene annotation (PMID: 38092765), but also contains new data and analyses. Great work, Alison!

Updated single cell reference atlas for the starlet anemone Nematostella vectensis

Frontiers in Zoology - The recent combination of genomics and single cell transcriptomics has allowed to assess a variety of non-conventional model organisms in much more depth. Single cell...

link.springer.com
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UCSC Cell Browser retweeted
Aparna Bhaduri@BhaduriLab13 Sep 2023
Replying to @BhaduriLab @prnano9 @AllenInstitute @DanielaJDiBella @LodatoS_Lab @ArlottaLab
This is just one example of how our meta-atlas can generate testable hypotheses. Check out/download our data from the UCSC Cell Browser (dev-ctx-meta-atlas.cells.ucs…). (13/16)
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UCSC Cell Browser retweeted
maximilianh@maximilianh14 Nov 2023
I’m at @czisinglecell2023 if you’re interested in @cellbrowser let me know
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🐁 Another amazing mouse dataset to check out! Come learn about rare newborn cells in mouse brains: adult-mouse-brain-newborn.ce… Many thanks to our submitter Ziyu Lu! @ziyu__lu #singlenucleus #snRNAseq #progenitorcells #mouse #oligodendrogenesis #neurogenesis #TrackerSci
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New rat dataset! 🐀 Come explore the rat liver atlas on the UCSC Cell Browser. rat-liver-atlas.cells.ucsc.e… Special thanks to our submitter Delaram Pouyabahar! @DelaramPB #rat #singlecell #liver #atlas #transcriptomics
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Big congratulations to Yonatan and team at UCSF on releasing their new paper in Science! 👏 You can explore this prenatal and postnatal human cortical development dataset on the UCSC Cell Browser: pre-postnatal-cortex.cells.u… #SingleCell #humanbrain #corticaldevelopment
Yonatan Perez@Yonatan_Peretz12 Oct 2023
Check out our new paper, just released: Single-cell analysis of prenatal and postnatal human cortical development | Science science.org/doi/10.1126/scie…

Single-cell analysis of prenatal and postnatal human cortical development

We analyzed >700,000 single-nucleus RNA sequencing profiles from 106 donors during prenatal and postnatal developmental stages and identified lineage-specific programs that underlie the development...

science.org
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UCSC Cell Browser retweeted
bioinformagic1an@anunicorn1um12 Oct 2023
Our single cell atlas from trigeminal ganglion cells was released on @cellbrowser ! Check out 🖥️ cells.ucsc.edu/?bp=trigemina… – at Houston, TX
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🐁New mouse dataset! Come view a single cell atlas of mice trigeminal ganglion cells: trigeminal-ganglion.cells.uc… Many thanks to our submitter Cristal Villalba @anunicorn1um! #SingleCellResearch #TrigeminalGanglion #CraniofacialPain #MiceResearch
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New dataset added! 🧠Come explore this new Alzheimer's Disease and aging brain atlas across 400 human brains from the ROSMAP project. Many thanks to our submitter Carles Boix and PIs @manoliskellis @DrLiHueiTsai cells.ucsc.edu/?ds=rosmap-ad… #agingbrain #alzheimersdisease
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We love seeing this number grow year after year 🌎🌍🌏 #Diversity #community #HCA2023GM #singlecell #humancellatlas
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Looking forward to the next 3 days of meetings! #singlecell #HCA2023GM #humancellatlas
Human Cell Atlas@humancellatlas9 Jul 2023
We’re really looking forward to #HCA2023GM starting tomorrow! To join us virtually, be sure to register at events.humancellatlas.org/20….
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To spatially dive into the datasets, check out the webbrowsers at: web.atlasxomics.com/visualiz… or brain-spatial-omics.cells.uc…
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We propose the ectodermal muscle may be a novel anthozoan muscle cell type. The single cell data is housed on the UCSC @cellbrowser! Thanks to @UlrichTechnau and all co-authors for making this possible. 4/4
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Newly published dataset! Come view snRNA-seq data of brain samples from DAP12-deficient Nasu-Hakola diseased individuals here: nhd-brain.cells.ucsc.edu Submitted by @YingyueZhou at @TheColonnaLab
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New dataset added! Come view glia diversity in the human hippocampus. hippo-lifespan.cells.ucsc.ed… Submitted by @YijingSu2022 @zhoujoeyyi @Upenn_SongMing #snRNAseq #singlenucleus #transcriptomics
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UCSC Cell Browser retweeted
Lucas Schirmer@schirmerlab4 Nov 2022
Thrilled to share our work on spatial cell type mapping of MS lesions spearheaded by @Cels121 and ⁦@PauBadiaM⁩ | paired single-cell & spatial transcriptomics | Thanks ⁦@saezlab⁩⁩, Simon Hametner, ⁦@DenisSchapiro⁩ ⁦@cellbrowser⁩ biorxiv.org/content/10.1101/…

Spatial cell type mapping of multiple sclerosis lesions

Multiple sclerosis (MS) is a prototypic chronic-inflammatory disease of the central nervous system. After initial lesion formation during active demyelination, inflammation is gradually compartment...

biorxiv.org
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Sawasdee 🙏! The UCSC Team is here at the #HCA2022Asia meeting in Bangkok! Come check out our posters tomorrow Nov 4th at posters #25 and #26. #SingleCell #visualization @humancellatlas
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