@cellbrowser

Interactive Single Cell Data Explorer and Data Repository Learn more: https://xitter.cf/t.co/BE8qg1pVuJ

 Santa Cruz, CA
cells.ucsc.edu/
Joined May 2022
  • Tweets93
  • Following389
  • Followers252
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UCSC Cell Browser retweeted
UCSC Cell Browser@cellbrowser16 Oct 2025
With the government shutdown impacting GEO submissions, we're happy to help researchers share their single-cell data in the meantime. You can easily submit datasets here: cells-submit.gi.ucsc.edu/ We’re not a substitute for GEO, but an alternative tool for hosting and visualizing
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UCSC Cell Browser retweeted
Aparna Bhaduri@BhaduriLab13 Sep 2023
Replying to @BhaduriLab @prnano9 @AllenInstitute @DanielaJDiBella @LodatoS_Lab @ArlottaLab
This is just one example of how our meta-atlas can generate testable hypotheses. Check out/download our data from the UCSC Cell Browser (dev-ctx-meta-atlas.cells.ucs…). (13/16)
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UCSC Cell Browser retweeted
maximilianh@maximilianh14 Nov 2023
I’m at @czisinglecell2023 if you’re interested in @cellbrowser let me know
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UCSC Cell Browser retweeted
bioinformagic1an@anunicorn1um12 Oct 2023
Our single cell atlas from trigeminal ganglion cells was released on @cellbrowser ! Check out 🖥️ cells.ucsc.edu/?bp=trigemina… – at Houston, TX
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To spatially dive into the datasets, check out the webbrowsers at: web.atlasxomics.com/visualiz… or brain-spatial-omics.cells.uc…
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We propose the ectodermal muscle may be a novel anthozoan muscle cell type. The single cell data is housed on the UCSC @cellbrowser! Thanks to @UlrichTechnau and all co-authors for making this possible. 4/4
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UCSC Cell Browser retweeted
Lucas Schirmer@schirmerlab4 Nov 2022
Thrilled to share our work on spatial cell type mapping of MS lesions spearheaded by @Cels121 and ⁦@PauBadiaM⁩ | paired single-cell & spatial transcriptomics | Thanks ⁦@saezlab⁩⁩, Simon Hametner, ⁦@DenisSchapiro⁩ ⁦@cellbrowser⁩ biorxiv.org/content/10.1101/…

Spatial cell type mapping of multiple sclerosis lesions

Multiple sclerosis (MS) is a prototypic chronic-inflammatory disease of the central nervous system. After initial lesion formation during active demyelination, inflammation is gradually compartment...

biorxiv.org
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UCSC Cell Browser retweeted
Juan C Ivancevich MD@Aller_MD23 Aug 2022
The #discovAIR project contributes to the #Human #Cell #Atlas #Lung #Biological #Network by establishing a first draft of the Human Lung Cell Atlas, advancing our insight into the cellular complexity and spatial organisation. buff.ly/3KtGdFf buff.ly/3KtGdFf
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UCSC Cell Browser retweeted
Rosa Uribe, PhD
@uribelabrice28 Jul 2022
Replying to @TanentzapfLab
Our scRNA-seq data is at UCSC Cell Browser @cellbrowser. Anyone can interactively look at UMAPs color coded by cell type, time points, and can search for genes of interest in the context of the UMAPs. Raw data are also downloadable. Expressed genes in excels with published work.
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UCSC Cell Browser retweeted
Mahesh Pol@PolMahesh113 Jul 2022
New PhD student after discussing potential projects/ideas with supervisor #PhD #chemtwitter #phdlife #research #researchers @PhDVoice #phdmemes
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UCSC Cell Browser retweeted
Fabian Theis
@fabian_theis5 Jul 2022
Spatial transcriptomics is becoming increasingly popular, with differential studies coming in a lot. How should we compare multiple spatial images?
33%on cell type level
19%via spatial summary stats
20%map to a spatial CCF
29%after full image alignmnt
375 votes • Final results
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UCSC Cell Browser retweeted
Fabian Theis
@fabian_theis27 Jun 2022
Replying to @Muzz_Haniffa
@Muzz_Haniffa beautifully arguing that collaboration does make sense in science, in particular in @humancellatlas
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Human Cell Atlas General Meeting #HCA2022GM
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UCSC Cell Browser retweeted
Andre Esteva, PhD
@AndreEsteva9 Jun 2022
Deep learning can personalize therapy for prostate cancer patients with far greater accuracy than physician (NCCN) guidelines. Today in @Nature @npjDigitalMed with @arteraAI @DrSpratticus @felixfengmd @RichardSocher et al. & thank you Marc @Benioff nature.com/articles/s41746-0…

Prostate cancer therapy personalization via multi-modal deep learning on randomized phase III...

npj Digital Medicine - Prostate cancer therapy personalization via multi-modal deep learning on randomized phase III clinical trials

nature.com
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UCSC Cell Browser retweeted
Benjamin Stewart@drbstewart30 May 2022
A method to watch #SingleCell ⭐️Smart-seq3xpress⭐️ 🔥moderate throughput 🔥full length transcript coverage 🔥 index sort compatible 🔥 allele and isoform resolution nature.com/articles/s41587-0…
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UCSC Cell Browser retweeted
Shyam Prabhakar Lab@shyam_lab31 May 2022
$100/genome! biorxiv.org/content/10.1101/…. With sequencing costs plummeting and #singlecell library prep costs likewise, data analytics is now (overwhelmingly) the limiting factor. Biologists, computer scientists: time to start taking each other seriously…
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UCSC Cell Browser retweeted
Parisa Nejad@_pnejad24 May 2022
Check out the @cellbrowser poster at the @UCSCPostdocs symposium! #SingleCell #ucsc #Genomics
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Out today in @ScienceMagazine, the Tabula Sapiens is 1 of 4 new open-access cross-tissue human cell atlases. This is a major milestone for #singlecell biology, giving us a deeper understanding of the human body and the diseases that afflict it. bit.ly/3FFbMsZ

The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

Single-cell transcriptomics provides a molecularly defined phenotypic reference of human cell types that spans 24 human tissues and organs.

science.org
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UCSC Cell Browser retweeted
Human Cell Atlas@humancellatlas13 May 2022
It’s fabulous that the Tabula Sapiens cross-tissue cell atlas is out now in @ScienceMagazine. Congratulations to everyone involved in this huge and collaborative #MultiTissue study. #HumanCellAtlas
Chan Zuckerberg Biohub Network@czbiohub12 May 2022
Out today in @ScienceMagazine, the Tabula Sapiens is 1 of 4 new open-access cross-tissue human cell atlases. This is a major milestone for #singlecell biology, giving us a deeper understanding of the human body and the diseases that afflict it. bit.ly/3FFbMsZ

The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans

Single-cell transcriptomics provides a molecularly defined phenotypic reference of human cell types that spans 24 human tissues and organs.

science.org
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UCSC Cell Browser retweeted
UCSC Cell Browser@cellbrowser6 May 2022
Help shape the #UCSC Cell Browser’s future! We are interested in feedback from the #SingleCell community on our features, interface, and datasets. forms.gle/LhgtuRGxZqPddh9M6 #Bioinformatics #scRNAseq #RNAseq

UCSC Cell Browser User Survey

In this questionnaire, we are interested to hear your thoughts on the features, interface, and datasets in the UCSC Cell Browser (https://cells.ucsc.edu). Your honest feedback is appreciated. Any...

docs.google.com
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