@bozeklab

Computational biology at the CMMC on the Cologne campus.

 Cologne Germany
bozeklab.com
Joined September 2018
  • Tweets66
  • Following173
  • Followers167
3Media
I’m shocked to hear what happened in @IDEAS_NCBR. My lab hosted several students that went through IDEAS. The technical and scientific level of our guests was always impressive which is a testimony to the world-class research center that @piotrsankowski has built up in Poland.
9
39
2,734
A new preprint from the Bozek Lab: biorxiv.org/content/10.1101/… We predict DLBCL recurrence and point to morphological features that are key for identifying recurring patients.

Deep learning-based interpretable prediction of recurrence of diffuse large B-cell lymphoma

Background The heterogeneous and aggressive nature of diffuse large B-cell lymphoma (DLBCL) presents significant treatment challenges as up to 50% of patients experience recurrence of disease after...

biorxiv.org
3
1
1
13
2,181
Another of our seminars "Future Medicine: Seminar on AI for Healthcare" will take place on May 7. We will host Dr. Patrick Günther from aimed analytics. Join us on May, 7 at 16:00 at the Gateway Small Seminar Room at Innodom (Weyertal 109, 50931 Köln) bozeklab.com/future-medicine…
433
Join our seminar Future Medicine: Seminar on AI for Healthcare. We will host Dr. Martin Weihrauch, from Smart in Media, with his presentation "Will AI replace the pathologists?". 19.03 at 16:00 at the Gateway Innodom (Weyertal 109, 50931 Köln), bozeklab.com/future-medicine…
320
We perform a fully unsupervised analysis of the filtration barrier in kidney and show that it allows to group images in a way that reflects their morphometry: frontiersin.org/articles/10.… Great collaboration with the NephroLab @unnersjo @LinusButt !

Frontiers | Self-supervised representation learning of filtration barrier in kidney

While the advance of deep learning has allowed to automate many tasks in bioimage analysis, quantifying key visual features of biological objects in an image...

frontiersin.org
4
10
1,503
We can segment diagnostic histopathology slides of lymphoma and tell you a lot about it’s microenvironment. Great collaboration with Reinhard Büttner and his team: sciencedirect.com/science/ar…
4
338
We have a freshly funded consortium in eye medicine in Cologne with plenty of challenging image analysis tasks ahead. We're looking for a postdoc, please spread/apply! euraxess.ec.europa.eu/jobs/1…
3
4
633
Exploring how p53 signaling encodes DNA damage and orchestrates proliferation. Our study delves into the temporal dynamics of individual cell p53 signals, shedding light on this central question. Kudos to @NicaGutu @nehabinish, and the team at @CommsBio for their excellent work!
Communications Biology@CommsBio28 Nov 2023
New study reveals unexpected temporal shifts in p53 and p21 dynamics, encoding damage strength and driving proliferation changes. nature.com/articles/s42003-0…
1
5
10
1,332
We can segment worms! With instance segmentation we extract their full poses also in challenging overlapping configurations. Find out more here: nature.com/articles/s41598-0…

WormSwin: Instance segmentation of C. elegans using vision transformer

Scientific Reports - WormSwin: Instance segmentation of C. elegans using vision transformer

nature.com
1
2
1
8
1,192
Marker-based 3D motion capture in mice reveals endocannabinoid kinematic phenotypes - the preprint of our new paper is available now: biorxiv.org/content/10.1101/…
2
5
1
12
1,441
Kasia Bozek retweeted
CRC1451@crc145117 May 2023
Great Talk @JankowskaBogna in our Motor Control Science Club ☀️👍 Thank you @bozeklab for your interaction with @crc1451 @UKKoeln @UniCologne ☀️☀️☀️
1
6
459
Kasia Bozek retweeted
CRC1451@crc14519 May 2023
📢Whatch out for our upcoming #hybrid @crc1451 Motor Control Science Club with Bogna Ignatowska-Jankowska @UKKoeln @UniCologne on May 17 with meet the speaker lunch. More info here 👇 or here 👉 crc1451.uni-koeln.de/index.p…
1
3
382
Our study on deep learning-based segmentation and multi-parameter morphology analysis of foot processes is online! Thanks for a great collaboration @LinusButt @bozeklab @HoehneMartin @BernhardScherm1 kidney-international.org/art…
5
10
946
It's online! Thank you to all the collaborators and I hope it's just the beginning! @unnersjo @LinusButt @HoehneMartin @BernhardScherm1 kidney-international.org/art…
1
11
540
We are predicting a diagnostic score in immunohistochemically stained slides of patient samples. Our method resolves cases unclear to the pathologists and provides some interpretability hints. All this and more: rdcu.be/c4qud
2
3
12
2,752
I am thrilled about my new role within @UKKoeln and the Medical Faculty @UniCologne . Plenty of exciting projects, collaborations, and images to analyze ahead of us!
Uniklinik Köln@UKKoeln1 Aug 2022
Neue Professorin für Data Analytics in #Bioinformatik an der Medizinischen Fakultät @UniCologne - Prof. Katarzyna Bozek zum 1. August angetreten uk-koeln.de/uniklinik-koeln/… #Uniklinik #Köln
Prof. Dr. rer. nat. Katarzyna Bozek, Foto: Michael Wodak

ALT Prof. Dr. rer. nat. Katarzyna Bozek, Foto: Michael Wodak

8
5
1
51
Bozek Lab is hiring! Do you want to join our team and work on really cool machine learning problems in medicine? Apply! bozek-lab.cmmc-uni-koeln.de/…
7
1
3
Kasia Bozek retweeted
Orit Peleg@oritpeleg25 Oct 2021
Time for some worm-blob love 🪱❤️ Amazed to see our computational model highlighted on the NYT 🎉 Wonderful collaboration with @BhamlaLab, congrats @nguyenchantal for leading this work! nytimes.com/2021/10/25/scien…

Behold, the Worm Blob and Its Computerized Twin (Published 2021)

It wriggles. It pulls. It falls apart and comes back together. It is everything you wish for and everything you fear.

nytimes.com
1
7
1
33
Do you have a PhD in #ComputerScience, #Physics or #Bioinformatics? A #Postdoc position in the research group "#DataScience of bioimages" is open at the Center for Molecular Medicine @UniCologne in #Germany! Apply by 10/13. tinyurl.com/pypftaap
5
7
Kasia Bozek retweeted
Tim Landgraf@tlandgraf23 Jul 2021
Why would anyone put a BEE on a COPTER and record their BRAIN activity? youtube.com/watch?v=bFNhv515… A thread.

Honeybee flies on copter

In an interdisciplinary research project with Prof. Randolf Menzel ...

youtube.com
1
6
2
17
Load more