Postdoctoral Researcher @eckmaslab @PeterMacCC 🇦🇺 | PhD @vaquerizas_lab @MPI_Muenster 🇩🇪 | BSc @lcgunam 🇲🇽 | Interested in epigenetic gene regulation
Melbourne, Australia
Joined June 2016
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Wrapping up my first week as a postdoc in the Eckersley-Maslin lab at @PeterMacCC!
Excited to be diving into epigenetic plasticity in cancer and looking forward to working with a fantastic team!
ALT Peter MacCallum Cancer Centre in Parkville, Melbourne, Victoria, Australia. https://commons.m.wikimedia.org/wiki/File:Eastern_entrance_of_the_Peter_MacCallum_Cancer_Centre_in_Parkville_(19_September_2024).jpg#mw-jump-to-license
Benjamín Hernández-Rodríguez retweeted
You still have time to register. Deadline extension to Monday 19th February! Come and join us in Hinxton for some lab and computational work on low-input epigenomics. We'll share our science and have some fun at the local pub ;)
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Very happy to have shared the PhD journey with so many wonderful colleagues and friends @vaquerizas_lab ! Thank you for your support and guidance along the way @vaquerizasjm
Benjamín defended his PhD thesis on Wednesday! Although we couldn't all be there to celebrate in person, we're all super proud. Congratulations, Dr @bhernanr!!
Benjamín Hernández-Rodríguez retweeted
The comprehensive atlas of developmental regulatory elements in zebrafish is published today in @NatureGenet nature.com/articles/s41588-0…. In addition to the BioRxiv submission xitter.cf/daniocode/status/14253… in this paper we added further resources and results. (1/n)
ALT black and white line genome browser track lines forming different developmental stages of zebrafish in the style of the album cover unknown pleasure by joy division.
ALT List of research highlights: Highlights • 1,802 samples, 38 stages, 38 labs, 19 assay types • precise TSS, alternative promoters, promoter architecture classes • developmental TF activity-qualified TFBS prediction • >140,000 cis-regulatory elements, single-cell based cell-type specificity • new visualisation of epigenetic profiles, new functional subclasses • H3K27ac-rich ensembles support early expression of developmental factors and long-range regulation • vertebrate epigenomic landscape conservation by anchored projection tool • vertebrate regulatory element equivalence without sequence conservation
DANIO-CODE is proud to share our findings and a huge multi-genomics resource on the regulatory elements in the development of #zebrafish. We analyzed 1,802 previously (un)published sequencing data sets across 38 developing stages and 21 assay types. (1/n) biorxiv.org/content/10.1101/…
ALT Screenshot of the title and authors of the paper.
ALT bubble chart of all available datasets per zebrafish stage
Benjamín Hernández-Rodríguez retweeted
DANIO-CODE is proud to share our findings and a huge multi-genomics resource on the regulatory elements in the development of #zebrafish. We analyzed 1,802 previously (un)published sequencing data sets across 38 developing stages and 21 assay types. (1/n) biorxiv.org/content/10.1101/…
ALT Screenshot of the title and authors of the paper.
ALT bubble chart of all available datasets per zebrafish stage
Benjamín Hernández-Rodríguez retweeted
If you're interested in #TransposableElement regulation, check out the latest work from @SalvadorAznar3 and @AAvgustinova
In brief, endogenous retrovirus misregulation due to G9a loss in the mammary gland trigger inflammatory response and impairs normal mammary gland development
🧬#IRBBarcelona scientists led by @SalvadorAznar3 identify that the expression of ancestral fragments of viral DNA results in a strong inflammatory response & causes breast tissue dysfunction.
📰@CellStemCell
➡️bit.ly/3hyWeNF
#IRBScience
🧵👇
Benjamín Hernández-Rodríguez retweeted
We’re delighted to share our latest work in collaboration with @CedricFeschotte‘s lab on #TransposableElements in #zebrafish development! @vaquerizasjm @MRC_LMS @MPI_Muenster
Find out more in the @biorxivpreprint biorxiv.org/content/10.1101/…
Summary below 👇 1/9
Benjamín Hernández-Rodríguez retweeted
We're excited that our latest work on genome organisation in Drosophila, led by our postdoc Liz Ing-Simmons @liz__is, is now published in @NatureGenet! #OpenAccess thanks to the @MPDL @vaquerizasjm nature.com/articles/s41588-0…
1/9
It was a pleasure to contribute to this project! Congrats to everybody involved!
Happy to see this story out @stemcellreports. Great collaboration with Konstantina Chanoumidou & the team of Tanja Kuhlmann at the University Hospital Muenster @UK_Muenster sciencedirect.com/science/ar…
Happy to work with excellent women colleagues @vaquerizas_lab & @MPI_Muenster ! #InternationalWomensDay #IWD2021
...and that's a wrap! We hope you enjoyed getting to know the amazing #WomenInScience in our lab!
Happy #InternationalWomensDay! #8M2021 #IWD2021
Excited to see this out @Dev_Cell!
Happy to be part of it thanks to @ZencodeITN.
Congratulations to all the authors!
@FabioDorazio @PiotrBalwierz @Circe777 Y Guo
L Wheatley A Jasiulewicz Y Hadzhiev @vaquerizasjm B Cairns @BorisLenhard @ferencmueller
Please check out our paper in Developmental Cell (bit.ly/2Pu7xdP) on the 2 phases of chromatin accessibility and genome activation in zebrafish PGCs. By @FabioDorazio with @PiotrBalwierz @Circe777 and contributions @splendidsunjane B Cairns @vaquerizas @BorisLenhard labs
Benjamín Hernández-Rodríguez retweeted
Happy to share our preprint on the role of retinoic acid to induce zebrafish pancreas, part of my PhD thesis within the @ZencodeITN disq.us/t/3srzvxm
Benjamín Hernández-Rodríguez retweeted
We're excited to present our latest work on #chromatin conformation during #Drosophila development! Now available on @biorxivpreprint biorxiv.org/content/10.1101/…
Read on for an overview! 1/9 @vaquerizasjm @liz__is
Benjamín Hernández-Rodríguez retweeted
Next in our #WomenInScience thread, from PhD student @bhernanr:
"Professor Esperanza Martínez-Romero has pioneered the use of environmentally friendly bacteria to support plant growth, increased agricultural productivity and reduced use of chemical fertilizers."
Benjamín Hernández-Rodríguez retweeted
We are happy to present FAN-C, the @vaquerizas_lab's fancy command line tool and Python framework for the analysis and visualisation of Hi-C data. Check out the preprint on @biorxivpreprint!
biorxiv.org/content/10.1101/… (1/8)
Very happy to see this in print! Fun and exciting collaboration with the Klose, Buckle & Nasmyth labs. Productive teamwork together with @jdprhodes, @angifeldmann, @NoeliaDiaz27, @RobKlose & @vaquerizasjm. Congrats to all the authors!
Check out our latest paper together with @RobKlose, Kim Nasmyth and Veronica J. Buckle labs out in @CellReports.
cell.com/cell-reports/fullte…
Summary of the main findings below: (1/8)
Benjamín Hernández-Rodríguez retweeted
Our ms on regulation of transcription in primordial germ cells is out in BioRxiv bit.ly/2tTXmoi led by @FabioDorazio @PiotrBalwierz with @vaquerizasjm @BorisLenhard B. Cairns lab #ZencodeITN #pgc #generegulation. See related study bit.ly/2sogBFX by @KettingLab
Benjamín Hernández-Rodríguez retweeted
It's a pleasure to share our latest work on how cohesin disrupts polycomb interactions in mESCs.
Check out our latest paper together with @RobKlose, Kim Nasmyth and Veronica J. Buckle labs out in @CellReports.
cell.com/cell-reports/fullte…
Summary of the main findings below: (1/8)