This project receives funding from the @EU_H2020 Research & Innovation Programme. Any related tweets reflect only the views of the project owner. Zebrafish FTW!
Joined August 2015
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ZENCODE-ITN retweeted
I am happy and proud that our DANIO-CODE @daniocode paper is finally out in Nature Genetics @NatureGenet! I wish to say thank you to everyone who helped and supported our work up until now, with the hope we can continue to deliver in the future as well!
nature.com/articles/s41588-0…
ZENCODE-ITN retweeted
DANIO-CODE is proud to share our findings and a huge multi-genomics resource on the regulatory elements in the development of #zebrafish. We analyzed 1,802 previously (un)published sequencing data sets across 38 developing stages and 21 assay types. (1/n) biorxiv.org/content/10.1101/…
ALT Screenshot of the title and authors of the paper.
ALT bubble chart of all available datasets per zebrafish stage
ZENCODE-ITN retweeted
Really excited to share my first author paper from my thesis work published in @genomeresearch m.genome.cshlp.org/content/e… In this study we show the presence of two different sets of antisense ncrna’s during zebrafish development.
ZENCODE-ITN retweeted
Our work on antisense ncRNAs is now accepted and online in @genomeresearch. Congratulations to @Sanjana17791037 on her first author publication and hard work. Also @carninci and Hazuki for great collaboration, reviewers for constructive comments. @ZencodeITN
Really excited to share my first author paper from my thesis work published in @genomeresearch m.genome.cshlp.org/content/e… In this study we show the presence of two different sets of antisense ncrna’s during zebrafish development.
ZENCODE-ITN retweeted
We started the this project with the ambitious goal of studying how the germ line links generations at the beginning of life. Now I like to think that goal is achieved and we better understand how the germ line forms. Great thanks to all co-authors
Please check out our paper in Developmental Cell (bit.ly/2Pu7xdP) on the 2 phases of chromatin accessibility and genome activation in zebrafish PGCs. By @FabioDorazio with @PiotrBalwierz @Circe777 and contributions @splendidsunjane B Cairns @vaquerizas @BorisLenhard labs
ZENCODE-ITN retweeted
Please check out our paper in Developmental Cell (bit.ly/2Pu7xdP) on the 2 phases of chromatin accessibility and genome activation in zebrafish PGCs. By @FabioDorazio with @PiotrBalwierz @Circe777 and contributions @splendidsunjane B Cairns @vaquerizas @BorisLenhard labs
ZENCODE-ITN retweeted
Our new work on distinct transcription initiation regulation by cell cycle dynamics @zebrafish in bioRxiv: tinyurl.com/weaplrd by @j_wragg_bham with L Roos, @ncvetesic @BorisLenhard lab #generegulation
ZENCODE-ITN retweeted
Our ms on regulation of transcription in primordial germ cells is out in BioRxiv bit.ly/2tTXmoi led by @FabioDorazio @PiotrBalwierz with @vaquerizasjm @BorisLenhard B. Cairns lab #ZencodeITN #pgc #generegulation. See related study bit.ly/2sogBFX by @KettingLab
ZENCODE-ITN retweeted
New paper alert!!! Read our latest by @CSchwayer to see how and why tight junction proteins phase separate and flow in vivo! A thread will follow soon :)
Article in this issue of Cell: Mechanosensation of Tight Junctions Depends on ZO-1 Phase Separation and Flow - zpr.io/t7YDX
ZENCODE-ITN retweeted
Exciting @Dev_journal special issue on chromatin & epigenetics
Highlights the new technologies & thinking changing the field
Many thanks to our editors @benoitbruneau, Haruhiko Koseki, Susan Strome and Maria-Elena Torres-Padilla for putting it together
dev.biologists.org/content/1…
ZENCODE-ITN retweeted
E' tempo per essere coinvolti personalmente in una grande scommessa,... milano.corriere.it/notizie/c…
ZENCODE-ITN retweeted
Many Congratulations to Sanjana for successfully defending her thesis! @Kanhere_lab @ferencmueller @ZencodeITN
ZENCODE-ITN retweeted
Both platforms showing VERY CONSISTENT results! Comparative analysis of sequencing technologies for single-cell transcriptomics genomebiology.biomedcentral.…
ZENCODE-ITN retweeted
I'm starting to lose track of all the highly nebulous 3D genome terms TADs, microTADs, subTADs, domains, loops, contacts, CRDs. I love reading about this stuff but it's literally impossible to know exactly how these terms map to each other in different papers. Please standardize.
ZENCODE-ITN retweeted
Extremely excited to share our preprint on human islet 3D chromatin maps!
If you are at #EMBLtranscript visit me in poster 224! biorxiv.org/content/early/20…
ZENCODE-ITN retweeted
A paper in Nature finds that CRISPR-guided DNA polymerases enable multiplexed and continuous diversification of user-defined genomic loci, which will be useful for a broad range of basic and biotechnological applications go.nature.com/2AE57l4
ZENCODE-ITN retweeted
How do the first genes get switched on in the embryo? See exciting report from @Giraldezlab doi.org/cr4w and our work doi.org/cr3h @bioarxivpreprint
In our report we used MOVIE, a novel imaging tool to reveal the first native gene expression in the embryo
ZENCODE-ITN retweeted
Very interesting study @ferencmueller A cell cycle-coordinated nuclear compartment for Polymerase II ... biorxiv.org/cgi/content/shor… #bioRxiv complementary to our recent study @GiraldezLab P300 BRd4 regulate genome activation doi.org/10.1101/369231
ZENCODE-ITN retweeted
First release of the DANIO-CODE track hub with a thousand epigenomics tracks is open! #IZCF2018, #ZencodeITN, #zebrafish
Check it out danio-code.zfin.org! Find your favourite gene, its expression, its true promoter or predict its enhancers and noncoding RNAs around it!
