Focusing on quantitative proteomics using ion mobility and data-independent acquisition techniques
Mainz, Germany
Joined December 2019
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Our benchmarks reveal inflated true FDR (3–5%) when modified peptidoforms are considered and highlight peak-matching errors in match-between-runs analyses.
Great collaboration with the labs of Andreas Hildebrandt and Mathias Wilhelm. (2/2)
Preprint: researchsquare.com/article/r…
New preprint out!
Timsim: a framework to simulate native #timsTOF dda-PASEF and dia-PASEF datasets with full ground-truth annotation, enabling precise benchmarking of #FDR and phosphosite localization errors in #proteomics and #immunopeptidomics workflows. (1/2)
Tenzer Lab retweeted
Big shoutout to @TenzerLab, @DavidGomezZep, and my fantastic colleagues for their support. Learn more about MAETi and stay tuned for the upcoming preprint! (3/3) #TeamMassSpec #immunopeptidomics
Tenzer Lab retweeted
The event was an incredible learning experience in #proteomics while reconnecting with old friends and making new ones in the community. Special thanks to #DGPF and @HUPO_org for supporting my journey with a travel grant. (2/3)
Tenzer Lab retweeted
Thrilled to have shared our latest research on "MAETi: Mild Acid Elution in a Tip enables MS-based immunopeptidomics profiling from as low as 50,000 cells" at #HUPO2024 in Dresden! (1/3)
Tenzer Lab retweeted
A new version 24 of the Human Protein Atlas resource has been released at the HUPO meeting in Dresden, Germany. The data is summarized in eight resources covering different aspects of human protein-coding genes in tissues, cells, cell lines and blood.
proteinatlas.org/news/2024-1…
Tenzer Lab retweeted
☹️Google Scholar is a great tool. But it doesn't show how papers are connected with each other.
😀Here's how to fast-track your literature review with a "visual search."
And export your papers to Zotero, Mendeley, or EndNote.
You can learn this workflow in 15 min:
ALT Search results in Google Scholar.
ALT A graph of related papers created with Litmaps.
Tenzer Lab retweeted
Follow this excellent tutorial if you want to improve your DDA-PASEF acquisitions with Thunder-DDA-PASEF and ensure high-coverage immunopeptidomics analyses ⬇️
Huge congrats to @TenzerLab @DavidGomezZep and co-authors for this fantastic work recently published in @NatureComms! 👏
Since it was published 3 weeks ago, I think it's time for a tutorial about leveraging Thunder-DDA-PASEF+MS2Rescore to achieve high-coverage immunopeptidomics on timsTOF instruments. 1/🧵
rdcu.be/dDDyh
@NatureComms
Tenzer Lab retweeted
Apply now for the Summer Selection of the International #PhD Program at the German Cancer Research Center, covering all areas of #cancerresearch, including #datascience, #bioinformatics, #epidemiology, #medicalphysics. To apply for your #PhDatDKFZ visit ➡️ t1p.de/3f58d
Job Alert 🌟 We are recruiting a postdoc in #lcms based #immunopeptidomics in our group @HITRONMainz - position is fully funded for two years. Check the job description and apply here:
jobs.dkfz.de/en/jobs/166492/…
Please RT!
Want to learn how to optimize your #DDA-PASEF acquisition for #immunopeptidomics? Use Thunder-DDA-PASEF! See our paper by @DavidGomezZep from @HITRONMainz: rdcu.be/dA7di
Thanks to a wonderful collaboration with @compomics and @ChristineCARAP1!
Excellent opportunity to connect to the #immunopeptidomics community and get in touch with the latest developments!
Save the date! The 3rd HUPO-HIPP summer school. Université de Montréal, Canada August 14th to 16th 2024. @hupo_org #immunopeptidomics #HLA hupo-hipp-summer-school.mail…
This is a critical and most likely not only theoretical issue. "Sample preparation blank/no cell" SCP samples can reveal unexpected effects.
Tenzer Lab retweeted
Congratulations! 👏👏👏
A round of applause for the poster prize winners at #EWCSProteomics 👏
🥇Ericka Itang, @MPI_Biochem
🏅Nawal Hajj Sleiman, @ENSdeLyon
🏅Sophia Müller-Dott, @UniHeidelberg, Heidelberg University Hospital
🏅Joris Frenz, @DKFZ , @KiTZ_HD, @uniklinik_hd
➡️s.embl.org/posterprizespro23…
Tenzer Lab retweeted
‼️To all junior professors and senior postdocs #teammassspec: if you are doing cool stuff in MS, please apply for the prestigious Mattauch-Herzog award of the German Society for MS 🔽.
Please check here:
DGMS.eu/en/awards-presented-…
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