Building the post scarcity future

San Francisco, CA
Joined February 2014
Some learnings from the last 12 months. At Aether our mission has always been to build a future of abundance for the human race. We plan on doing this by using our AI to design totally new classes of proteins that can assemble complex products in modular factories (more on this another time).
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Biological systems are much more like machines than text, they data that describes them needs to have a lot higher dimensionality
This is a very poor one line summary of the article by @DaphneKoller IMO. The point is not just data volume. The right kind of data scaled in the right axis with the right experimental designs for well defined tasks + using the models to discover biology (not eval maxxing)
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Pavle Jeremić retweeted
Yes! These people have made building in San Francisco so restrictive that OVER HALF of the homes there now are illegal to build today For SF to get in compliance, 130,860 homes would have to be destroyed This self-inflicted housing shortage is the city's biggest problem—by far
when rent is $8k for a one bedroom, please remember that the fault is in the people who, for 50 years, showed up to argue against nearly every unit of housing proposed these people are no san franciscans
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Nonprofits have hollowed out our state capacity and corrupted the progressive project
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Pavle Jeremić retweeted
Replying to @nicholadrummond
Seriously bad news for helicopters.
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This is incredible
This time, I am publishing in full the album authored by TsKBEM in 1969, dedicated to the mock-up article N1-L3 №1M1, built for the comprehensive development of the rocket-space system. 1/16
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Pavle Jeremić retweeted
Multiplexing can be thought of as "GPU-ification" of a complex biological system Serial measurement becomes massively parallel To turn biology digital, you need data at *scale* and *relevance* The power of multiplexing is you get both.
Multiplexed in vivo screening is the future of drug development. @ManifoldBio is multiplexing protein therapies in vivo. @GordianBio is multiplexing gene therapies in vivo. @waypointbio is multiplexing cell therapies in vivo. GT Bio is multiplexing LNPs in vivo. 50Y portcos all
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Pavle Jeremić retweeted
My HOA is two weeks away from developing a nuclear weapon
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Co-design is the future! Any effort to design de-novo functions must include both the protein design and the actual molecular function/target in model, awesome work here further validating that strategy
What if AI could invent enzymes that nature hasn’t seen? 👩‍🔬🧑‍🔬 Introducing 🪩 DISCO: Diffusion for Sequence-structure CO-design 14 rounds of directed evolution and over a year of wet lab work. That's what it took to engineer an enzyme for selective C(sp³)–H insertion, one of the most challenging transformations in organic chemistry. DISCO surpasses this with a single plate. No pre-specified catalytic residues, no template, no theozyme, no inverse folding, just joint diffusion over protein sequence and structure. 📝 Blog: disco-design.github.io/ 📄 Paper: arxiv.org/abs/2604.05181 💻 Code: github.com/DISCO-design/DISC…
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Pavle Jeremić retweeted
San Francisco has failed at infrastructure for so long that reporters will look at a 25 story building and call it "inconceivable" and "sci-fi"
Even the sci-fi film "Big Hero 6" could not envision a San Francisco with tall buildings in the Marina. In the real world, one is likely coming to the Marina Safeway site. No matter what politicians or people calling for a boycott want. From @esksf missionlocal.org/2026/04/mar…
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Protein function models are the future! Requires massive multi-functional datasets to generalize not just to “natural” functions but also to push well beyond what nature evolved.
Progress in AI modeling of proteins leaves major gaps affecting most proteins and especially functional analysis. The opportunities to transcend them beacon: AI models can now predict static protein structures with high accuracy. This achievement is rightly celebrated. It is equally important to recognize what remains unresolved and why those gaps matter hugely for biology. 1. Modeling intrinsically disordered regions (IDRs) is a central limitation. Roughly 30–40% of amino acid residues in the human proteome fall into this category, and ~70% of proteins contain substantial disordered segments. These regions do not adopt a single stable structure; instead, they exist as dynamic ensembles that often become structured only upon binding or under specific cellular conditions. Current AI models -- trained on static structures -- do not predict these ensembles. Instead, they either assign low confidence or produce arbitrary conformations. This is not a minor edge case; it is a large and functionally critical fraction of proteome space, deeply involved in signaling, regulation, and disease. 2. A second key limitation concerns protein function. Biology ultimately depends on changes in conformation, interactions, and state. Many key biological processes arise from shifts between multiple conformations or from subtle perturbations induced by amino acid substitutions, post-translational modifications, or binding partners. Current models are optimized to predict a single, most likely structure. They are not designed to capture how that structure changes under perturbation, nor how populations of states shift. As a result, predicting function -- arguably the central goal -- remains a weakness in many cases. Outlook These two challenges point to a deeper issue: proteins are not static objects but dynamic systems governed by energy landscapes. What is needed next is not just better structure prediction, but models that can capturing ensembles, relative state populations, and the effects of perturbations on those distributions. This will likely require accurate and scalable measurements of proteins, integrating generative models, explicit or learned energetics, and dynamic sampling into a unified framework. In this sense, the field is entering a new phase. Predicting “the structure” was a milestone. Understanding how proteins move, adapt, and function -- especially in the large, disordered fraction of the proteome -- remains the frontier.
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Pavle Jeremić retweeted
We need to make this true again.
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Pavle Jeremić retweeted
Make San Francisco a shitty place to be a drug addict
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Star Wars depicts a future where cybersecurity just doesn't work. They have AGI but they keep it bottled up in droids; they don't network anything. As soon as R2-D2 gets access to an actual network he successfully hacks the Death Star.
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One of the best sci fi series ever
People keep saying FAM is turning into to The Expanse, but it's actually going to become the Red Mars trilogy. And a space elevator on Mars was actually a major plot point for a Mars rebellion in that series.
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Pavle Jeremić retweeted
I've said it once, I'll say it again and keep repeating myself: No expensive housing market builds lots of housing. That is not a coincidence: build homes and prices are controlled!
Striking graph from @esoltas and Jon Gruber
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Pavle Jeremić retweeted
Whenever the Big One hits San Francisco and levels vast swaths of the city, we will finally confront an uncomfortable truth: we have outlawed our own existence. Cities built over generations cannot be rebuilt because our codes are anti-city, and most people don’t know it.
Lahaina burned down in 2023. As of 2026, few homes have been rebuilt. One big reason why? Lahaina's zoning is one of the most restrictive in the US. Only low-density SFHs allowed. Most can hardly afford to rebuild. There is demand for new apartments, but the law prohibits it.
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Sometimes biology come up with annoying terminology (see kinases) but other times it’s simply delightful
TIL about the existence of blebbisomes (large extracellular vesicles that contain everything but a nucleus) and they are named this because they, in the technical parlance, "bleb around" it's so WHIMSICAL i'm so happy bleb bleb bleb
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Pavle Jeremić retweeted
This curve not being discontinuous with GPT-3 is fascinating
Datacentres now account for 7% of US electricity demand
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This is why all these startups have generally failed, algorithmic approaches for over 10 years have been able to find targets, but the real value unlock only happens well into clinical trials when safety and efficacy are determined!
Yep! We have so many drug targets. Finding targets is not the issue. The issue is testing them and going through the rigamarole to get them produced and on the market. AI-in-medicine people are missing this and talking about an area that just isn't the bottleneck to new drugs.
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Pavle Jeremić retweeted
Replying to @saikatc
Saikat, are you aware than San Francisco county has a $15.9B budget for under 900k people? We could halve the budget and still be spending double what Denver county spends. There is no funding shortage, just a lot of corruption.
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