Dr. “rare nut“ retweeted
Our long-awaited @NatureMicrobiol article is finally out!! Steroid hormones produced by coral-associated Endozoicomonas influence coral immune response during thermal stress!! Big time with @DiatomsBacteria @TrentHaydon, & many others!!
nature.com/articles/s41564-0…
Dr. “rare nut“ retweeted
Using ancient DNA recovered from a fossil bone, scientists have reconstructed a complete genome of the little bush moa, an extinct species of flightless bird that once roamed the forested islands of New Zealand.
Learn more on #NationalFossilDay: scim.ag/4y9QYU1
Dr. “rare nut“ retweeted
Always wanted to fix microbial cells while still enabling downstream DNA sequencing?
Try the new microbial fixative: DSP
Preprint is out now! doi.org/10.64898/2026.10.12.…
Huge thanks to my collaborators @LoyTeam & Kenneth Wasmund & my supervisors @S_J_Mc & Gene Tyson!
Dr. “rare nut“ retweeted
A hidden archaeal lineage with an ultra-reduced genome retaining only its replicative core
cell.com/current-biology/abs…
Dr. “rare nut“ retweeted
Applications are open for a free Structural Bioinformatics & Molecular Modelling workshop on 14 October. Learn protein structure analysis, PDB exploration and visualisation using bioinformatics tools.
Register: docs.google.com/forms/d/e/1F…
Dr. “rare nut“ retweeted
Why do small dogs live longer than large dog species, and what is the biologic basis of differences in lifespan and healthspan?
Epigenetics.
There's a lot in the methylation pattern of dogs to explain this @ScienceMagazine
science.org/doi/10.1126/scie…
Dr. “rare nut“ retweeted
Peatland metagenomes analyzed in this study contained almost 10k biosynthetic gene clusters, but only 9-27% were expressed in situ. These results show that genome mining alone would overstate active secondary metabolism. doi.org/10.1038/s41467-026-7…
Dr. “rare nut“ retweeted
A streamlined and abundant Nitrosopumilus population retains vitamin biosynthesis under high purifying selection in the Baltic Sea biorxiv.org/content/10.64898…
Dr. “rare nut“ retweeted
From 3,400 metagenomes of 362 lakes on seven continents, the authors reconstructed ~20,000 mitochondrial genomes of microbial eukaryotes, filling sparse branches of the eukaryotic tree such as SAR, Cryptophyceae and Haptista. A calibrated 98.1% identity threshold was used to delimit species, allowing comparison of protist richness and phylogenetic breadth across lakes, depths and seasons.
doi.org/10.1038/s41467-026-7…
Dr. “rare nut“ retweeted
New study with contributions from our lab, out in Nature Communications: across 87 European lakes, giant virus relative abundance nearly tripled from northern to southern Europe. Differences in light and resources helped explain their distribution, while lakes with more abundant and diverse giant virus communities tended to have lower primary production.
nature.com/articles/s41467-0…
Dr. “rare nut“ retweeted
I just released ReShiki v0.6.1, a free, open-source alternative to ChemDraw.
Chemical drawing, reinvented.
Built in Rust for macOS, Windows, and Linux. Draw molecules, build reaction schemes, and export figures.
Try it: reshiki.com
Dr. “rare nut“ retweeted
New study supported by our lab published in Cell: Incendiamoeba cascadensis, a newly described geothermal amoeba, divides at 63°C, setting a new upper temperature record for eukaryotic life. Comparative genomics and cell-biological analyses reveal adaptations linked to protein homeostasis, genome stability, and environmental sensing. sciencedirect.com/science/ar…
Dr. “rare nut“ retweeted
Phylogenetics is getting a structural upgrade: unicore builds core-gene phylogenies using Foldseek and ProstT5, comparing protein structure rather than just sequence. A glimpse of where tree-building is headed. 🌳🧬
#RustLang #bioinformatics #phylogenomics
github.com/steineggerlab/uni…
Dr. “rare nut“ retweeted
Functional capacities drive recruitment of bacteria into plant root microbiota dlvr.it/TVWj6J #MicroSky
Dr. “rare nut“ retweeted
Evidence of direct methane production from long-chain fatty acids by thermophilic Archaeoglobi dlvr.it/TVV4sF #MicroSky
Dr. “rare nut“ retweeted
In ten years of laboratory passage the tsetse symbiont Sodalis glossinidius lost 31 genes and encountered a 16,493 bp deletion, showing that genome decay continues without host selection. The genome consists of 49% pseudogenes, which is well above the roughly 1% found in free-living bacteria.
doi.org/10.1371/journal.pntd…
Dr. “rare nut“ retweeted
An eco-evolutionary theory of host-associated microbiomes | PNAS pnas.org/doi/abs/10.1073/pna…
Dr. “rare nut“ retweeted
Microbial genomes have been extensively mined for new proteins, but the noncoding sequences between genes remain largely unexplored despite encoding important regulatory and functional information.
In our new work, we asked whether gLM2 could help systematically discover these intergenic features. tatta.bio/intergenic-sae
Dr. “rare nut“ retweeted
Did you know that you may be able to receive remuneration for your publications?
After reading Nature’s 2024 “magic money tree” article, I registered with ProLitteris in Switzerland. I just received CHF 329.25 for my 2025 peer-reviewed papers. doi.org/10.1038/d41586-024-0…
Dr. “rare nut“ retweeted
Overcoming gelling agent-derived inhibitory factors enables the cultivation of fastidious nitrifiers on solid media
#microbiology
@ISMEComms @ISME_microbes
doi.org/10.1093/ismeco/ycag2…



















