@Phil_at_OeRC
Joined July 2010
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  • Following448
  • Followers400
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We spoke to Professor of Data Readiness @SusannaASansone about what it is like to be a woman scientist in the STEM disciplines at the @UniofOxford, and ideas for helping women be better represented in future. #INWED23 oerc.ox.ac.uk/news/being-one…
Professor Susanna Sansone

ALT Professor Susanna Sansone

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Thank you @CaroleAnneGoble for a great presentation about #elixir #rdmkit #FAIRcookbook during @bioitworld
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Philippe Rocca-Serra retweeted
FAIRlady@SusannaASansone
21 Apr 2023
#PhD #DPhil #research #studentship opportunity for Home Students only on #OpenData - a collaboration between @UniofOxford and @DiamondLightSou More details on the project, eligibility and how to apply ➡️ eng.ox.ac.uk/study/research-… Closes 19th May!
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ISA-API v0.14.2 is out! github.com/ISA-tools/isa-api… Check out the release notes for all the new features and fixes: graphql, json-ld/rdf, sql, IO optimization @PrecisionTox @MetaboLights @NASAGeneLab @FAIRDOM_eu @nfdi4plants @workflow4metabo kudos to @Terazus for the awesome work!

Release Release 0.14.2 · ISA-tools/isa-api

Enhancements and Cleanup: ISA MODEL The model.py file has been split into the model module. Each class has been split into a dedicated file. Added a method from_dict() to the ISA Investigation cla...

github.com
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In the latest @ReproTeaUEA talk, Dr @allysonlister discusses how @FAIRsharing_org works with its community to aid discoverability of their data resources to enable #FAIR data; as well as the @RDA_Europe / @EOSCFuture Future Domain Ambassador programme oerc.ox.ac.uk/news/fairshari…
Dr Allyson Lister (left) & Shafag Garayeva (Right) on the UEA ReproducibiliTEA seminar

ALT Dr Allyson Lister (left) & Shafag Garayeva (Right) on the UEA ReproducibiliTEA seminar

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Brilliant 2 days with @ralf_weber & Martin Jones from @unibirmingham + @Terazus at @OxfordeResearch. Study design, randomization, metadata multi-omics-from planning to deposition #FAIRdata to @emblebi archives! @MetaboLights @ENASequence supporting @isatools for @PrecisionTox
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Almost unnoticed, a subtle hommage to #TheQueen by the Duke of Cambridge pub in #Oxford, little Clarendon street …
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Nice Comment in @ScientificData and potentially a nice content to add to the #FAIRCookbook by @FAIRplus_eu @TonyBurdett Nice to the see @PhnmlH2020 mentioned ! Thx @ola_spjuth & Hi @csteinbeck @kennethhaug
Nathan Sheffield@shefflab
12 Sep 2022
From biomedical cloud platforms to microservices: next steps in FAIR data and analysis: doi.org/10.1038/s41597-022-0… -- Read our new perspective on biomedical cloud computing at Scientific Data.

From biomedical cloud platforms to microservices: next steps in FAIR data and analysis

Scientific Data - The biomedical research community is investing heavily in biomedical cloud platforms. Cloud computing holds great promise for addressing challenges with big data and ensuring...

nature.com
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Well Done @IbEmam and colleagues at @FAIRplus_eu, more at: fairplus.github.io/Data-Matu… and also from the FAIR Cookbook faircookbook.elixir-europe.o… #ukbiocuration2022

Overview

Overview FAIRplus data maturity

fairplus.github.io
Tiago Lubiana@lubianat
5 May 2022
Levels of FAIRness at #ukbiocuration2022 Nice work, clear similarities with TBL's 5-star LOD schema 5stardata.info/en/
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Philippe Rocca-Serra retweeted
Frictionless Data@frictionlessd8a
14 Jan 2022
Scientific data is often under-utilised because #datasets are created in fragmented, domain-specific, or proprietary formats that aren’t easily used by others. We worked with @Phil_at_OeRC from @CfdeNih to address these #reproducibility challenges. frictionlessdata.io/blog/202…

Frictionless data packages for the NIH CFDE project

The Frictionless Data team has been working with Dr. Philippe Rocca-Serra on increasing data set discoverability and highlighting how disparate data can be combined...

frictionlessdata.io
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Oxford e-Research Centre is delighted to announce that two faculty members received the title of full professor at the @UniofOxford Recognition of Distinction Awards 2021. Congratulations to @SusannaASansone and @DavidWallom oerc.ox.ac.uk/news/universit…
Susanna Sansone, david Wallom

ALT Susanna Sansone, david Wallom

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Philippe Rocca-Serra retweeted
Nat Friedman
@natfriedman
27 Jul 2021
Thanks to the ruby-cff gem creators who’ve worked with us to make this happen! @sdruskat, @roberthaines77 and Jurriaan H. Spaaks
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Philippe Rocca-Serra retweeted
FAIRlady@SusannaASansone
9 Mar 2021
Starting a new #PrecisionToxicology project and build a #FAIRDataCommons to explore the science, and shape policy and regulation aimed at protecting human health from effects of harmful chemicals ▶️ oerc.ox.ac.uk/news/precision… @PrecisionTox #H_2020 @Phil_at_OeRC @OxfordeResearch
Oxford e-Research Centre@OxfordeResearch
9 Mar 2021
The @PrecisionTox project has been launched with €19.3M funding. It will Build a #FAIR Data Commons to explore the science, and shape policy & regulation aimed at protecting human health from effects of harmful chemicals #PrecisionToxicology #H_2020 oerc.ox.ac.uk/news/precision…
PrecisionTox project logo

ALT PrecisionTox project logo

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👏 nicely done! That looks like a great recipe to add @FAIRplus_eu #FAIRcookbook especially if working on data integration mashups. What question would you ask and which other resource would you hit?
Clément Frainay@clement_frainay
25 Feb 2021
Our knowledge graph portal is finally out! Link biomedical concepts to compounds for #metabolomics data interpretation. Find more in our last preprint: doi.org/10.1101/2021.02.12.4… @DelmasMaxime1 @franckgiacomoni @ofilangi @MetExplore @nilspaulhe @vinson6431
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THAT'S IT. OLS-2 is done. 🤩😭😻😍 All the feels, super proud of all the amazing people who are OLS - mentors, experts, @bebatut @MalvikaSharan and @emmy_ft - and three sets of BEAUTIFUL presentations over the last three days 💪💪 inclusive open science will take over the world.
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Philippe Rocca-Serra retweeted
FAIRlady@SusannaASansone
1 Dec 2020
Thank you to the our panelists and audience for the lively discussion, and to the #FAIRConvergence organisers!
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Philippe Rocca-Serra retweeted
FAIRlady@SusannaASansone
1 Dec 2020
Last @Phil_at_OeRC @OxfordeResearch on the #FAIRcookbook by @FAIRplus_eu; a set of practical recipes anchored to challenges & needs, and real data scenarios from pharma fairplus.github.io/the-fair-… the platform reuses @turingway book on #reproducibility - #FAIRdata #FAIRConvergence
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Philippe Rocca-Serra retweeted
ISA Metadata Toolkit@isatools
17 Nov 2020
Our pre-print on #ISAtools ISA API is out! Thanks to @DavidJohnsonIM @Phil_at_OeRC & our colleagues and users from @PhnmlH2020 @copo_project @MetaboLights ! ISA is also an @ElixirNodeUk @ELIXIREurope resource for #FAIRdata #reproducibility #interoperability #opendata #openscience
bioRxiv@biorxivpreprint
17 Nov 2020
ISA API: An open platform for interoperable life science experimental metadata biorxiv.org/cgi/content/shor… #bioRxiv
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Welcome back Ontomaton! Kuddos to @antarcticdesign for the help! Create Metadata Templates with annotation restriction to specific ontologies. Annotation and Tag existing documents (relies on @bioportal API), Search terms in Ontologies (@EBIOLS , @bioportal , LinkedOpenVocabs)
ISA Metadata Toolkit@isatools
16 Nov 2020
Ontomaton is back! You can now do Ontology Lookups & Ontology Annotation in any #Google #Spreadsheet by installing our new Ontomaton Add-on, available from #GoogleMarketplace ! #ISAtools are also @ELIXIREurope @ElixirNodeUk resource for #FAIRdata #reproducibility #opendata
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A massive thanks to @kirstie_j and @MalvikaSharan for their feedback, insights and welcoming ways today during the @turingway session at the @ELIXIREurope #BioHackEU20 . Looking forward to the next steps with @FAIRplus_eu growing content. Brilliant Community!
Kirstie Whitaker@kirstie_j
10 Nov 2020
Replying to @kirstie_j
We’re so delighted that the fantastic @Phil_at_OeRC and @SusannaASansone are building a @ProjectJupyter #JupyterBook for their #FAIRCookbook project! Wonderful interoperable open source and reusable (#FAIR!!) projects for the win! @turingway #BookDash📚💨
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