@nilspaulhe

Java dev. / web tech. / bioinformatics

Joined March 2010
  • Tweets37
  • Following104
  • Followers56
#MetabolomicSemanticDataLake from @Metabohub #P2M2 Guillaume Laisney is in the place at @jobim2024 Come and talk to us about #BigSata #SemanticWeb #KnowledgeGraph applied to the analysis of #metabolomic studies with our biological hypothesis and contextualization data factory
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The best workpackage of the @Metabohub is at @jobim2024 !! First day - everybody is present
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nils retweeted
SFBI@SfbiFr
17 Jun 2024
Pssst Pssst !!! 🤭 Le #programme détaillé de @jobim2024 est en ligne : jobim2024.sciencesconf.org/d… 🥰
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📢Last preprint doi.org/10.26434/chemrxiv-20… from @Metabohub #bioinformatics - I hope the topic will be accepted by the #metabolomics community: #FragHub: A mass spectral libraries data integration workflow #MoNA #GNPS #MassBank #MSDIAL #PeakForest

FragHub: A mass spectral libraries data integration workflow | ChemRxiv

Open mass spectral libraries (OMSL) are critical for metabolite annotation and machine learning, especially given the rising volume of untargeted metabolomic studies and the development of annotation...

chemrxiv.org
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Our latest position paper aims to promote the sharing of #lipidomics results through the adoption and harmonization of lipid naming: doi.org/10.1007/s11306-023-0… @wittingmichael1 @nilspaulhe @MetExplore @lipidmaps @chebit @SwissLipids @JustineBertra10 #InChi #MetaboHUB

Challenges and perspectives for naming lipids in the context of lipidomics

Metabolomics - Lipids are key compounds in the study of metabolism and are increasingly studied in biology projects. It is a very broad family that encompasses many compounds, and the name of the...

link.springer.com
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Dr @clement_frainay presents his talk "impact of #ChatGPT and #AI on our research - part I" #12JSmetaboHub
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Follow up by @yguitton44 !
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Last but not least, @JustineBertra10 in charge of WP6 presents "service & communication" #12JSmetaboHub
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Now @franckgiacomoni in charge of WP5 presents "creating #FAIR e-resources for knowledge mining" #12JSmetaboHub
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Now Wp4 with G. Marti & Y. Guitton: presentation of spectral resources for annotation #12JSmetaboHub
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Would you like to work in a multidisciplinary environment on human health research questions involving advanced #datascience tools? There is a #java developer position open in our team (18 months contract) at INRAE Clermont-Ferrand, France peakforest.org/sites/default… Feel free to RT!
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The MetaSaurus project web portal is launched today! metasaurus.fr Very nice consortium to move forward on #ontologies and help #Metabolomics in structuring these data and better integrating resources into the #WebOfData #LinkedData #SemanticWeb
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[#ScientificResult @CEA_Joliot in @metabolomics] #PeakForest, an #open-resource to organize #MS and #NMR spectral data for #metabolome annotation in laboratories. @Metabohub; French #metabolomics community; #Database; #FAIR #Metabolite-Identification; joliot.cea.fr/drf/joliot/en/…

PeakForest, a digital infrastructure for metabolomic analysis and metabolite identification

A consortium of researchers, including SPI/DMTS metabolomics specialists, presents PeakForest, a database of NMR and mass spectra, which provides storage and annotation services for spectra of...

joliot.cea.fr
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The 11th @Metabohub scientific days are started here in Clermont-Ferrand. Let's talk about #metabolomics and #fluxomics during 3 days at the foot of volcanoes #11JS_MetaboHub
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Internship position in our group for Master student / Thanks for RT! Spectral data visualisation web-component building - Key words: Web component, type-script, vue.js, metabolomics peakforest.org/sites/default…
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2d Internship position in our group for Master student / Thanks for RT! Construction and deployment of metabolomics microservices on the UCA CLOUD infrastructure - Key words: #Kubernetes, #Cloud, #Java , #python, #microservices, #OpenAPI, #metabolomics peakforest.org/sites/default…
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Kickoff meeting of #Metasaurus at Tours with Magalie Weber from @INRAE_BIA @INRAE_TRANSFORM @SopAubin from @INRAE_DipSO @nilspaulhe @ofilangi from @Metabohub #Metabolomics #OpenScience #Ontology #SemanticWeb #Thesaurus
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Our latest collaboration with @DelmasMaxime1 cduperier fvinson @MetExplore @ofilangi @PabloRMier and @clement_frainay available on #bioRxiv with doi.org/10.1101/2022.09.13.5… #KnowledgeGraphes #Semantics #DiseaseAssociations
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New GTN - galaxy training available from @workflow4metabo - on LC-MS data processing: training.galaxyproject.org/t… - All tools are available on gitHub (github.com/workflow4metabolo…) and full workflow on workflow4metabolomics.usegal…
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