Jonathan Thorsen, MD PhD Clinical microbiome scientist Senior Researcher @Copsac_com Prev. @UCPH_BRIDGE @metabolcenter @microbiomix
Copenhagen, Denmark
Joined June 2019
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Jonathan Thorsen retweeted
For somebody working on the gut #microbiome, the responses ("gross", "embarrassment", "pseudoscience", etc.) to this @Nature article on the treatment of C-section babies with their mother’s poo are quite sobering. So, I thought I would provide a perspective in the thread below.
Feeding a baby born by caesarean section milk containing a tiny bit of their mother’s poo introduces beneficial microbes to their gut go.nature.com/48oD7hK
Jonathan Thorsen retweeted
Our online mixOmics workshop starts on Oct 21. It is self-paced with 4 live webinars, and we provide advice to analyse your own data.
You will learn about data exploration and omics data integration techniques! See 👇 mixomics.org/2024/06/online-…
@MelbIntGen
#omics #Rstats
Lovely to come back from holiday and see this published, led by the great Trine Zachariasen. MAGinator is a wonderful resource helping unify taxonomy and functions in the analysis of metagenomes. Oh and the stuff Gisle said 👇
Now a @COPSAC_com default!
Thanks all contributors!
Trine Zachariasen made this masterpiece during her PhD. Go check it out!
MAGinator provides de novo identification of subspecies-level microbes and accurate abundance estimates of MAGs.
Code and cluster setup using Conda and Snakemake on Github
nature.com/articles/s41467-0…
Jonathan Thorsen retweeted
Trine Zachariasen made this masterpiece during her PhD. Go check it out!
MAGinator provides de novo identification of subspecies-level microbes and accurate abundance estimates of MAGs.
Code and cluster setup using Conda and Snakemake on Github
nature.com/articles/s41467-0…
Jonathan Thorsen retweeted
UGENS FORSKER: ”Jeg vil gerne forstå den rolle, som bakterier spiller for børneastma – særligt hos de små børn"🦠🩺
Sådan siger @Jonathanthdk fra @HerlevGentofte, der undersøger børneastma i målet om bedre forebyggelse og behandling af sygdommen.
dff.dk/ansog/stottet-forskni…
Jonathan Thorsen retweeted
.@microUCPH @Jonathanthdk @stokholm_jakob @COPSAC_com present MAGinator, a tool that enables accurate profiling of microbiomes with strain-level information. #BiotechNatureComms @NatureComms
nature.com/articles/s41467-0…
Jonathan Thorsen retweeted
📢📢We are hiring📢📢
Looking for a senior post-doc/research associate with expertise in #immunology to lead our team in unravelling new human inborn errors of immunity. Our lab is in beautiful Vancouver 🇨🇦. Full details here: ubc.wd10.myworkdayjobs.com/u…
@UBCMicroImmuno @UBC
Help me find the right person!
We are looking for a PhD student @COPSAC_com to explore the airway microbiome in childhood asthma. Great project, fantastic place to work & learn.
Please share with anyone who might be interested. Questions? DM me!
Thanks!
copsac.com/home/about/jobs/p…
Jonathan Thorsen retweeted
We are hiring! Please consider this unique postion in planning your career @tugraz
Jonathan Thorsen retweeted
Save the date and register for the upcoming webinar:
"Maternal inflammation during pregnancy and risk of immune-mediated diseases in birth cohorts"
Tuesday, April 9, at 13:00 BST / 14:00 CEST
selectscience.net/register.a…
@Jonathanthdk @HEDIMED2020 @COPSAC_com @EUScienceInnov
Jonathan Thorsen retweeted
Thanks to guests @nic_timpson of @CO90s (UK) 🇬🇧, @Melissa_Wake of @GenV_for_kids (Australia) 🇦🇺, @stokholm_jakob & @KlausBonnelykke of @COPSAC_com (Denmark) 🇩🇰 for sharing their incredible experiences with #birthcohorts at the CHILD @sickkids symposium!
childstudy.ca/symposium-spot…
Jonathan Thorsen retweeted
We wrote a grant in 2015, got funded in 2016 (JPIHDHL/Europe, DAHES/Denmark, INRAE/France, #CIHR/Canada), then a team of great scientists elevated this initiative to a new high. Extra funding led to this👇Huge congrats to the EarlyVir Team!
#phage #COPSAC
nature.com/articles/s41591-0…
Jonathan Thorsen retweeted
So exited to share our newest paper in @NatureMedicine, where we link early life gut virome with later asthma.
Specific compositions of temperate phages drive the association independently from their bacterial counterpart and interacts with host genetics.
nature.com/articles/s41591-0…
Thrilled and excited to be recipient of Sapere Aude research leader - the national Danish starting grant.
I owe a lot of thanks to colleagues and collaborators, and of course to @DFF_raad for the support!
Read more: (DK) dff.dk/ansog/stottet-forskni…
(1/2)
(EN) dff.dk/en/apply/supported-re…
Read more about Sapere Aude and the other cool projects & researchers supported:
(DK) dff.dk/aktuelt/nyheder/fri-f…
(EN) dff.dk/en/current-news-and-e…
(2/2)
Jonathan Thorsen retweeted
I have an open position for a DTU Tenure Track Assistant Professor in Explainable AI Bioinformatics at the Bioinformatics Section at DTU Health Tech
efzu.fa.em2.oraclecloud.com/…
📣New results on the role of the infant airway microbiota in childhood asthma!
We went back to where it all began - the COPSAC2000 cohort - and sequenced 285 samples from 1-year olds 👶, which had hung out in the biobank for 20 years!❄️
Read more: doi.org/10.1038/s41467-023-4…
(The samples were in the freezer, not the babies!)
Published in @NatureComms
Many thanks to team @COPSAC_com , our longtime partners in microbiomes @microUCPH as well as new ones @uni__augsburg
@Xuanji_Li @bjersand @TCrispr @aneumann @txurv @KlausBonnelykke @stokholm_jakob