Improving life science with programmable experiments. 🧬 🤖 Home of the Protein Engineering Tournament & Open Datasets Initiative

Joined January 2022
The Align Foundation retweeted
✨ Excited to participate in the @Align_Bio 2025 Protein Engineering Tournament to design a killer plastic-degrading PETase!
1/4 🚀 Announcing the 2025 Protein Engineering Tournament. This year’s challenge: design PETase enzymes, which degrade the type of plastic in bottles. Can AI-guided protein design help solve the climate crisis? Let’s find out! ⬇️ #AIforBiology #ClimateTech #ProteinEngineering #OpenScience
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The Align Foundation retweeted
đź§« Meet the keynote speakers for the 2025 scverse conference! Erika Alden DeBenedictis, Co-founder of The Align Foundation & CEO of Pioneer Labs @erika_alden_d @Align_Bio @Pioneer__Labs #scverse #scverse2025 #StructuralBiology #Biotech #Stanford
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Heads up - there are eight new publications on Align's zenodo page zenodo.org/communities/align… Aiming to publish early, often, and way faster than traditional peer review :) Feedback welcome!
📣 To take our open science efforts to the next level, Align has created a new publications page on its website! alignbio.org/publications
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The Align Foundation retweeted
What Biology Can Learn from Physics 🚀 World War II shifted physics from a field of brilliant individuals to one of well-managed teams. CERN, LIGO, and the JWST all cost >$1 billion. Biology has had a few "moonshots," but not nearly as many. Why not? Read: readcodon.com/p/biology-phys… *** There are probably a few reasons. First, biology research is inherently broad. A zoologist, ecologist, and protein engineer all call themselves “biologists,” but rarely attend the same conferences. Biological discoveries are also made organically, with thousands of teams chipping away at problems. And it's opaque; researchers don’t share their results until a paper is published. These quirks make it difficult to coordinate on large problems.  The foundation of physics has been built over several centuries, thanks to a constant back-and-forth dialogue between theory and experiment. Progress in biology will similarly accelerate once the field builds predictive models that can accurately anticipate the outcome of experiments before they have taken place. AlphaFold2, a model that predicts protein structures, was a great start. But now, biologists should work to build predictive models at more scales: from molecules, to whole cells, to the behavior of cells at the macroscale. This is what @Align_Bio and others are doing. But it will require large-scale funding and coordination amongst biologists. The last century of biology looked like an organic and exploratory process, with many small groups discovering and rediscovering curiosities. But the next century may resemble a coordinated, whole-field effort to divide biology into a series of prediction tasks and then solve those tasks, one-by-one. This piece was written with @erika_alden_d.
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The Align Foundation retweeted
Replying to @wolfejosh
@wolfejosh - what do you think are the next key Common Task Frameworks - similar to Protein Databank + CASP = AlphaFold2? See openproblems.bio/ and bioautomation22.org/
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The Align Foundation retweeted
We're excited to get started! 🤖🧫 Thanks so much to the @BA_Challenge_22 for supporting our efforts in the @kesvelt lab on mammalian protein receptor engineering for pandemic preparedness.
Excited to announce the members of the 2022 Challenge Cohort! These nine groups will pioneer research science in the cloud by writing foundational open-source methods and gathering the first cloud datasets. Read more about the cohort bioautomation22.org/home/#co…
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The Align Foundation retweeted
Excited to take part in the @BA_Challenge_22 along with @AnushChP, @nonstandardcode, and @mrhuseyintas from the @geochurch lab! Brainstorming cool lab automation ideas was unreal. Time to bring them to life thanks to the Emerald Cloud Labs in collaboration with @SchmidtFutures.
Excited to announce the members of the 2022 Challenge Cohort! These nine groups will pioneer research science in the cloud by writing foundational open-source methods and gathering the first cloud datasets. Read more about the cohort bioautomation22.org/home/#co…
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The Align Foundation retweeted
Thrilled to be part of the 2022 Bioautomation Challenge with @nonstandardcode @mrhuseyintas @RusselVincent25 @geochurch ! Many thanks @erika_alden_d and team for the initiative! Time to automate and increase reproducibility of protocols and generation of data! 🔥🤩
Excited to announce the members of the 2022 Challenge Cohort! These nine groups will pioneer research science in the cloud by writing foundational open-source methods and gathering the first cloud datasets. Read more about the cohort bioautomation22.org/home/#co…
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The Align Foundation retweeted
Congratulations to the nine awardees of the 2022 Bioautomation Challenge. Learn more about how the challenge aims to kickstart academic use of cloud labs to promote reproducibility and big data collection in life science research: bioautomation22.org/
Excited to announce the members of the 2022 Challenge Cohort! These nine groups will pioneer research science in the cloud by writing foundational open-source methods and gathering the first cloud datasets. Read more about the cohort bioautomation22.org/home/#co…
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Really cool to hear @jewettlab_NU talk about the work @Andrew_C_Hunt has done on rapid multivalent binder design with CFPS. The Baker lab is now expanding in this approach as part of @BA_Challenge_22. Really awesome screen 🧬🧪 @UWproteindesign #seed2022 science.org/doi/10.1126/scit…
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Biotech industry thinks “open source scripting” and “lab automation” are among the most useful work for academia to tackle #SEED2022 @BA_Challenge_22 @hamilton_py @chorye
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"We are moving toward a new paradigm of reproducible, scalable research." Some thoughts on why I started the 2022 Bioautomation Challenge @BA_Challenge_22 erikaaldendeb.substack.com/p…
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The Align Foundation retweeted
When we described this @erika_alden_d idea to the team, most common question: this is so obviously useful, how has this not happened already. Lesson: There are lots of obvious ideas not getting done. Let’s do them. xitter.cf/ericschmidt/status/149…
.@SchmidtFutures is excited to support The 2022 Bioautomation Challenge, which seeks to accelerate the adoption of automation in protein engineering. Join the challenge at bioautomation22.org @BA_Challenge_22 @erika_alden_d @tkalil2050
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The Align Foundation retweeted
.@SchmidtFutures is excited to support The 2022 Bioautomation Challenge, which seeks to accelerate the adoption of automation in protein engineering. Join the challenge at bioautomation22.org @BA_Challenge_22 @erika_alden_d @tkalil2050
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The Align Foundation retweeted
The 2022 Bioautomation Challenge is an effort to accelerate the adoption of automation by leading researchers in protein engineering. In a new Q&A, @tkalil2050 asks @erika_alden_d how automation in life science research can increase impact. dayoneproject.org/erika-debe…
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The Align Foundation retweeted
Turn that Methods section you have been writing into code.
Excited to announce the 2022 Bioautomation Challenge, a grant program designed to kickstart academic use of automation to improve reproducibility and big dataset collection in life science! Join the challenge. Proposals due March 16, 2022 bioautomation22.org/
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The Align Foundation retweeted
Excited that @SchmidtFutures is supporting the 2022 Bioautomation Challenge to accelerate progress in protein engineering! bioautomation22.org/
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