
Trying to understand stuff and me! Postdoctoral Researcher @DartmouthPBS @Dartmouth PhD @NYUPsych @nyuniversity BS-MS '21 @IiserTirupati
Manhattan, NY
Joined February 2019
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New preprint! 🚨 Work w/ Sangita Dandekar & Clayton Curtis at NYU during my PhD.
We show how prefrontal & visual cortices coordinate to keep working memories alive via localized & long-range β-band dynamics. 🧠
biorxiv.org/content/10.64898… (1/5)
Mrugank Dake retweeted
The outpouring of interest in our paper has been … a bit insane.
May I make four points?
1. We have not shown that “consciousness has a frame rate.”
I can see why people draw this conclusion: we report that inferotemporal and prefrontal cortex alternate between conscious and suppressed states roughly every 60 ms during binocular rivalry.
Consciousness depends on many brain areas, and our paper reports results from only a few select nodes.
We still don’t know how conscious access works--the actual recipe for generating conscious experience. What we have shown is that deep in the brain there is an extremely strong signal, rich enough to reconstruct a high-dimensional face in detail, that is inaccessible to consciousness. As I argued in the original tweet, this makes the problem of conscious access a lot more experimentally tractable. But to claim “consciousness has a frame rate,” one would need to have actually solved the mechanism for conscious access and shown that this mechanism operates at a frame rate.
While we currently don’t know conclusively one way or the other (see VanRullen & Koch, 2003 for a review of positive evidence), I personally am skeptical that consciousness has a frame rate. I believe the brain, within posterior parietal cortex, has continuous tracking mechanisms that actively represent the persistence of matter, including ourselves as physical bodies. The coupling between these persistent tracking processes and feature representations across the brain (like those in face patches) is, I think, the essential mechanism of conscious access.
This coupling need not happen at the rate of inferotemporal alternations (and inferotemporal cortex itself may not even alternate outside of the artificial situation of binocular rivalry). As an analogy: imagine the area crucial for conscious access holding a steady drone note, while inferotemporal cortex alternates between two notes, one in harmony and one dissonant. Inferotemporal content might couple to the drone only at moments of harmony, yet experience would still be continuous, because the drone itself (the tracking process that I believe is at the core of conscious perception) never stops. And areas without conflicting content, like auditory cortex during visual rivalry, could stay in continuous harmony with the drone.
In sum, there is no reason to conclude from our study that consciousness is discrete, with a "frame rate."
2. Our results resemble Jezek et al. 2011 (as @jjsakon notes).
Jezek et al. trained rats in two boxes that were identical except for their lighting cues, so that hippocampal place cells formed two distinct maps, one per box. They then “teleported” the rat by abruptly switching the lights. For a few seconds afterwards, CA3 place-cell activity flickered between the two maps, synced to the theta cycle (~125 ms).
@StanDehaene first pointed this paper out to me, and reading it blew me away. To my mind it is the strongest evidence for a bistable attractor in the brain, because the competing maps are stored within the hippocampus itself.
I think the phenomenon we see may be very similar at the circuit level: a bistable attractor network within inferotemporal cortex that alternately converges to one of two patterns, as cells in face patches work together to build a coherent representation of the input. In our case, both images are present in the input, so the competition could arise within IT or be inherited from earlier areas such as V1--recording there is an important next step. (It also still puzzles me that we didn’t see strong coherence between face patches ML and AM.)
More broadly, what’s different about our paper is the brain area (inferotemporal cortex, often modeled as a feedforward DNN) and the ability to relate the two competing patterns to consciousness, with one granted conscious access and the other not.
3. Please comment on bioRxiv!
The Twitter attention has been cool, but I really hope colleagues will be generous enough to post detailed commentary on bioRxiv, where there are currently 0 comments. As @seemaychou points out, peer review doesn’t have to come from just three anonymous reviewers. We would be truly grateful for your critical feedback.
4. Stay tuned
This work was done at Caltech, Berkeley, in collaboration with @EngelTatiana at Princeton, funded by NIH and HHMI.
I hope to share our vision soon for how we can solve consciousness @AsteraInstitute
1/ We discovered something totally unexpected about the neural structure of consciousness that overturns decades of thinking on its biological basis and brings us significantly closer to the recipe for generating conscious awareness.
New preprint: biorxiv.org/content/10.64898… (led by @HesseJanis, with @FrankLanfranchi, @_conor_mcgrory, @Yuelin_Shi, and @EngelTatiana)
Mrugank Dake retweeted
1/ We discovered something totally unexpected about the neural structure of consciousness that overturns decades of thinking on its biological basis and brings us significantly closer to the recipe for generating conscious awareness.
New preprint: biorxiv.org/content/10.64898… (led by @HesseJanis, with @FrankLanfranchi, @_conor_mcgrory, @Yuelin_Shi, and @EngelTatiana)
Mrugank Dake retweeted
Great to see this language make its way to mainstream neuroscience nature.com/articles/s41593-0…
Mrugank Dake retweeted
My recent work on symmetries and continuous attractors in disordered neural circuits, with Larry Abbott and Haim Sompolinsky, has been published in Nature Neuroscience:
rdcu.be/mRN8zv2Hv1ba
Additionally, I am honored that Francesca Mastrogiuseppe and Srdjan Ostojic wrote a beautiful accompanying News & Views:
nature.com/articles/s41593-0…
Our brains represent continuous quantities, many of which reside on manifolds with nontrivial topology. A canonical example from navigation is head direction, a circular variable. Grid cells, discovered more recently, represent position via a toroidal manifold. An individual neuron forgets its input within tens of milliseconds, yet these representations persist over much longer timescales (many seconds or minutes). Thus, this persistence must arise from the collective dynamics of the network.
A classical solution to this problem is the continuous attractor, now a cornerstone network model in theoretical neuroscience. In the ring-attractor model of Ben-Yishai, Bar-Or, and Sompolinsky (PNAS, 1995), neurons are arranged on a ring, with Mexican-hat connections (local excitation, longer-range inhibition) that depend only on the angular distance between neurons. These connections thus have a continuous, rotational symmetry. Through spontaneous breaking of this symmetry, the network forms a bump of activity that can sit at any angle, so the stable states form a continuous ring.
This model makes a strong prediction, namely, that every neuron's tuning curve has the same shape, up to a shift. This prediction holds well in the fly but is violated in mammals. For example, in over a thousand mouse head-direction cells recorded by Duszkiewicz et al. (Nature Neuroscience, 2024), the tuning curves are heterogeneous, often with multiple, irregularly spaced peaks.
Reconciling idealized models with experimental data is a central challenge in neuroscience. The discrepancy described above provides a sharp example and raises the question: Is the classical mechanism relevant to mammalian circuits at all?
The point of our paper is to show that heterogeneous tuning is compatible with this mechanism; in fact, in the limit N → ∞, networks that generate such tuning have effective dynamics of exactly the classical form.
The paper proceeds in four steps, briefly summarized here.
First, we constructed a recurrent network directly from the recorded tuning curves, choosing the minimum-norm weights for which these tuning curves are fixed points. The weights look unstructured, but the network behaves as an approximate continuous attractor. After a perturbation, activity returns to the ring, and the resulting state persists for tens of seconds.
Second, to study large networks, we fit a generative process for tuning curves in which input currents are drawn from a circularly symmetric Gaussian process and passed through a nonlinearity, similar to an approach that Mainali, da Silveira, and Burak (Neuron, 2025) applied to place cells. The resulting tuning curves are individually heterogeneous but drawn from a rotationally symmetric distribution. This process has only three parameters but reproduces several statistical features of the data.
Third, we analyzed the weights in the limit N → ∞. The eigenvalues come in degenerate pairs, as in a classical ring attractor (whose weight matrix is circulant), but the eigenvectors are disordered rather than Fourier modes. Thus, in connectome data, a ring attractor need not look like a circulant matrix, and plotting neurons by their loadings on the leading eigenvectors need not reveal a ring. Eigenvalue degeneracies may provide a more robust signature.
Finally, we derived a dynamical mean-field theory for the limit N → ∞. Strikingly, the resulting equation has the same form as that of the classical ring model above, with Mexican-hat interactions and rotational symmetry. Thus, these disordered networks operate by the classical mechanism, namely, spontaneous symmetry breaking leading to a bump.
A few broader thoughts...
Classical models, which produce identical tuning curves, are a measure-zero special case of a much larger class of networks with the same dynamics. Heterogeneity may therefore be common in mammalian circuits simply because it is generic. However, the disordered solutions require many neurons, which may explain why flies, with relatively few neurons, use a ring attractor much closer to the classical model.
Inferring circuit structure from the structure of the world has repeatedly succeeded near the sensory periphery but is harder deeper in the brain. Our results suggest a route for continuous variables. Over lifelong timescales, the world is often symmetric (e.g., no head direction is special). If the distribution of tuning curves inherits this symmetry, then, as we argue, a circuit that generates these tuning curves as an attractor should reflect this symmetry in its connectivity, in the form of eigenvalue degeneracies.
Code to reproduce all analyses is available here:
github.com/davidclark1/symme…
Mrugank Dake retweeted
Excited to share our work, now published in Neuropsychologia! We show how temporal expectation shifts priorities in working memory—and can lead to long-term forgetting. Huge thanks to @lewpealab and @ZiyaoZhangZZ for their help and support!
sciencedirect.com/science/ar…
Mrugank Dake retweeted
It sounds insane, because we're used to a particular way of doing research: of giving and receiving credit, of counting beans, of hiring, recruiting, and promoting. And the machine god came to crush that game. The old game is dead. That reasonably causes incredible amounts of dread for many folks, who understand this as the death of research.
But it's not about Research, but the way we played the game. The old game was built around scarcity, scarce compute, scarce students, scarce hours, scarce people who knew the right technique and method etc. Most of a research career went into managing and playing along these constraints. Those walls just came crushing down. One person with a good question can now do what used to take a lab and five years.
You do not need permission, you do not need a big grant, you do not need a professor or researcher title, or a team of twenty experts , or one thousand gpus to stare straight into the first light of the universe.
How absolutely incredible
Mrugank Dake retweeted
if you value intelligence above all other human qualities, you’re gonna have a bad time
Mrugank Dake retweeted
Excited to share that our paper “Polar probe linearly decodes semantic structures from LLMs” was accepted at COLM 2026! 🎉
Joint work with the amazing: @PierreOrhan, Emmanuel Chemla, @lakretz and @JeanRemiKing
We find a simple geometry for semantic structures in LLMs
👇🧵1/5
Mrugank Dake retweeted
An academic colleague just told me his students aren't using LLMs because he can't afford even the low tier monthly subscription for everyone. I'm not sure the folks making $Xm/yr at frontier labs understand just how much of a bubble they're in.
Mrugank Dake retweeted
Replying to @ShahabBakht
If someone had simply published an academic paper on transformers, no one would have cared. The impact has come from scaling it to solve actual problems. In neuroscience we similarly tackle problems at such a small scale (describing the neural correlate of percept X or task Y) that it's hard to make people care. It's hard to even know if any proposed algorithm is right.
But I feel so inspired by what's happened in AI...if we also scale our efforts and aim for understanding the *full structure of the brain's model of world and self*, there actually is hope to solve the entire problem in our lifetime...and when we do, we will not only figure out intelligence (as LLMs have), but consciousness.
What is the brain's algorithm for tracking a persistent piece of matter? What is the brain's algorithm creating programs with variable arguments? What is the brain's data structure for representing "I"? I am dying to know.
Re the neural foundation model program: I think intelligently stitching data together across sessions and subjects is important, and foundation models are a good tool for that. But I absolutely disagree that they are an answer to understanding the brain.
Mrugank Dake retweeted
This week's shot of "Salkhenge."
Salk's architecture was specifically built for the sunsets on the spring and fall equinoxes to perfectly align with the “River of Life” water feature, which runs through the center of the Institute's iconic travertine courtyard.
Founder Jonas Salk described the "River of Life" as "the trickle of knowledge produced by this facility, spilling out into the body of knowledge, symbolized by the ocean." He also said it creates a sense of “connection to a higher purpose.”
#SalkInstitute #Sunset #SanDiego #LaJolla
Mrugank Dake retweeted
We’ve set up a molecular biology lab at Anthropic and we’re announcing our first discovery! Claude discovered a new CRISPR-like enzyme.
950 agents spent 21 hours searching through a database of DNA sequences until one of the agents found something striking: “[The DNA next to the RT] is spectacular: I can see by eye a tandem repeat array … that's a CRISPR-like … repeat array?!”.
After analysis and testing in our lab, we found that the sequence is a previously uncharacterized enzyme system. We don’t know what it does yet, but it has features reminiscent of CRISPR.
Our lab looks like a typical molecular biology lab. Our research only involves the lower-levels of biosafety risk level; we don’t handle pathogens that can infect humans, and all the lab work is performed by human scientists. We’re sharing these early findings with the community to show how Claude can be used to accelerate fundamental research in biology.
Claude has discovered a previously unknown enzyme system hidden in the DNA of bacteriophages. Beside the enzyme’s gene sits a long array of repeating DNA—a structure that looks somewhat similar to CRISPR.
We don’t yet understand what this system does, but only a handful of known systems share its features, and all of them are able to cut, copy, and paste DNA. Historically, the discovery of such programmable systems has helped revolutionize medicine. CRISPR, for instance, is now the foundation of genetic medicines. But it will take much more work to learn what this system does, and whether it can be put to similar use.
Read more: anthropic.com/news/claude-di…
Mrugank Dake retweeted
Claude has discovered a previously unknown enzyme system hidden in the DNA of bacteriophages. Beside the enzyme’s gene sits a long array of repeating DNA—a structure that looks somewhat similar to CRISPR.
We don’t yet understand what this system does, but only a handful of known systems share its features, and all of them are able to cut, copy, and paste DNA. Historically, the discovery of such programmable systems has helped revolutionize medicine. CRISPR, for instance, is now the foundation of genetic medicines. But it will take much more work to learn what this system does, and whether it can be put to similar use.
Read more: anthropic.com/news/claude-di…
Mrugank Dake retweeted
We are hiring a data engineer! If you are interested in working with human intracranial data, processing pipelines, and an awesome team, please apply!
neurojobs.sfn.org/job/39840/…
Mrugank Dake retweeted
Through the VOICE trial, Terry is using his Neuralink implant to help fine-tune a brain-to-voice interface for himself and others who can’t speak. He trained the algorithm first by miming speech as best he could, then by simply thinking the words and hearing them come out in his own natural voice.
Powered by Grok Voice from @spacexai
I taught a robotic hand to walk on its fingertips.
Usually an arm takes the hand to the work. We wanted it to get there without one, then use the same fingers to do the job.
Meet Fingers as Legs.
Video: youtu.be/yGoW5WHBf20
Paper: arxiv.org/abs/2609.17172
Mrugank Dake retweeted
An M.I.T. Report Warns A.I. Is Causing ‘Cognitive Surrender.’
nytimes.com/2026/09/15/us/un…























