@seq_code

Registry: https://xitter.cf/t.co/28MwYmgB3O | SeqCode: https://xitter.cf/t.co/p5JhhPH9hi | Initiative: https://xitter.cf/t.co/P4nB7cqcbe | Join the SeqCode Community: https://xitter.cf/t.co/5dr9CirsK6 Public discussion: https://xitter.cf/t.co/SlUi4h2eyn

Joined November 2021
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4Media
Alkaliphilic aceticlastic #methanogen isolated from mud volcano. #seqcode #taxonomy #methane frontiersin.org/articles/10.… – at Marburg, Germany

Frontiers | Phenotypic and genomic characterization of the first alkaliphilic aceticlastic methan...

Methanogenic enrichments with acetate from a soda lake and a terrestrial mud volcano allowed for the first time to obtain highly purified cultures of alkalip...

frontiersin.org
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Prof. Whitman will be giving an update on the @seq_code at our next #BISMiSLive session this Saturday. Make sure you register at shorturl.at/cqrG6 @Leibniz_DSMZ_en @BccmCollections @CCUG_Sweden @CABI_Microbe @ICSP_news @ari_pune #TaxonomyIsFun
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📢 Request for public discussion and ballot to amend #SeqCode rules on the priority of #Candidatus names and correction of typographic and orthographic errors is now available: nature.com/articles/s43705-0… Stay tuned to join the conversation! @seq_code @ISME_microbes #nomenclature

Request for public discussion and ballot to amend SeqCode rules on priority of Candidatus names and...

ISME Communications - Request for public discussion and ballot to amend SeqCode rules on priority of Candidatus names and correction of typographic and orthographic errors

nature.com
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📢Exciting News! 🏆Introducing the #SeqCode Prize - Celebrating Excellence in Prokaryotic Systematics! seqco.de/prize The SeqCode Prize recognises outstanding contributions in prokaryotic systematics and the promotion of the SeqCode. 🌐 🌟Categories include 👇
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1️⃣ Innovative software leveraging the SeqCode Registry capabilities. 2️⃣ Advancements in genomic data quality assessment. 3️⃣ Contributions to prokaryotic systematics using the SeqCode. 4️⃣ Educational materials and outreach related to SeqCode. #SeqCode @ISME_microbes
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Prepare to be recognised for your scientific achievements! 🎖️
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Final version of the GTDB-defined higher taxa ms is live. doi.org/10.1093/femsle/fnad0… @ace_gtdb @seq_code #ICNP #nomenclature

Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two...

Provisional names earlier given to 329 GTDB-defined prokaryotic taxa are proposed according to the validation criteria of the International Code of Nomencl

academic.oup.com
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If its our inability to grow the so-far uncultivated in the lab, do they not exist? Why differentiate between the ones we can and cannot grow in the lab? #TaxonomyIsFun listen to the debates @BISMiS_ Live YouTube channel @ICSP_news @seq_code
SeqCode@seq_code24 Jul 2023
Meet our elephant in the room! We can't hide anymore...so we talk about it a lot :) In this @ASMicrobiology blog, Barny and Brian are discussing why it is essential to link names to genome sequences and what #SeqCode is in short. asm.org/Articles/2023/July/S…

SeqCode Provides a Path to Name Uncultivated Prokaryotes

Most prokaryotes have never been cultured and cannot be named under the International Code of Nomenclature of Prokaryotes. How does the SeqCode help name them based on their genome sequences.

asm.org
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Meet our elephant in the room! We can't hide anymore...so we talk about it a lot :) In this @ASMicrobiology blog, Barny and Brian are discussing why it is essential to link names to genome sequences and what #SeqCode is in short. asm.org/Articles/2023/July/S…

SeqCode Provides a Path to Name Uncultivated Prokaryotes

Most prokaryotes have never been cultured and cannot be named under the International Code of Nomenclature of Prokaryotes. How does the SeqCode help name them based on their genome sequences.

asm.org
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Can we accelerate taxonomy? Check this paper from @sigwartae "...In many cases, it is clear that not all of these data are necessary to distinguish one species from another. This is interesting science, but not actually required for naming species..."
Julia Sigwart@sigwartae15 Jun 2023
Species are going extinct before we discover them Have you ever wondered, why is there no service to support taxonomic species descriptions? The @oceanspecies_ project @Senckenberg proposes a new model to accelerate taxonomy. Out now in #Bioessays onlinelibrary.wiley.com/doi/…
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Miguel gave a great overview of the #SeqCode and its Registry at #FEMS2023 yesterday. Still got some questions? Don't hesitate to ask or drop your suggestions here: seqcode-public.slack.com/ssb… #seqcode #nomenclature @ISME_microbes
Evgenii Protasov@protasov_evgeni12 Jul 2023
Replying to @seq_code
@seq_code presented by Luis Rodriguez-R @_lrr_ . A way to name uncultured diversity and make genomes the type material. Important step to describe real diversity of microbes rather than only those that can be cultured (fyi, tiniest fraction so far).
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Are you planning to name a new #virus within your bacterial host or both? Consider this new guidelines 👇 "The guidelines presented here focus on the MIUViG standards on genome quality and expand on the naming of sequences and their submission to public databases."
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📢Save the date!
Fanus Venter@fanus_venter6 Jul 2023
Looking forward to this opportunity to share our thoughts @SteenkampEmma @marike_palmer @Fabiteam1 @UPnasagric
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Melandre van Lill ready to use the #seqcode to describe her Mesorhizobium species @Fabiteam1 @UPnasagric @seq_code
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😍
Fanus Venter@fanus_venter7 Jul 2023
Promoting the #seqcode for the description of Mesorhizobium species @fanus_venter @SteenkampEmma @Fabiteam1 @UPnasagric @seq_code
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📢Dear #community, the #SeqCode Reconciliation Commission is seeking your contribution: please share your opinion on the validation of the species name #Omnitrophus_fodinae by commenting on this request: github.com/seq-code/seqcode/… Deadline: 28 September 2023
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Merci @GilbertGreub for your support! "Members of the ICSP subcommittee for the taxonomy of the phylum Chlamydiae (Chlamydiota)... recommend the registration of new names of uncultured prokaryotes in the SeqCode registry." doi.org/10.1016/j.nmni.2023.… #SeqCode @ISME_microbes
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Minutes of the last EB meeting has been added to the #ISME website: isme-microbes.org/seqcode-re… #SeqCode @ISME_microbes
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If you are planning to validate names under different codes, this talk can be useful: How to interpret the #ICNP. Remember that #SeqCode recognise names that are validly published under the ICNP!
Bergey's Intl. Society for Microbial Systematics@BISMiS_9 Jun 2023
#ICNP #TaxonomyIsFun Ever wondered how to interpret and apply the code? Learn all about it from Markus Göker at the next #BISMiSLive session. Register at shorturl.at/dER06 @Leibniz_DSMZ_en @BccmCollections @CCUG_Sweden @ICSP_news @NCMR_Pune @ari_pune @NCIM_NCLPune
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A tale of two codes: The continuation ;) researchsquare.com/article/r… #SeqCode #GTDB #ICNP

Proposal of names for 328 higher rank taxa defined in the Genome Taxonomy Database under two...

The Genome Taxonomy Database (GTDB) is a taxonomic framework that defines prokaryotic taxa as monophyletic groups in concatenated protein reference trees according to systematic criteria. This has...

researchsquare.com
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