Academic @KingstonECE | Scientist| Bioinformatician| Alumni @UniSouthWales|Fellow @HEAcademy| OASciAdvocate | @ISCB Wikipedia Committee Co-Chair ๐Ÿ‡ฌ๐Ÿ‡ง

Joined March 2010
๐Ÿš€ ๐ˆ๐ฆ๐ฉ๐š๐œ๐ญ ๐จ๐Ÿ ๐‚๐Ž๐•๐ˆ๐ƒ-๐Ÿ๐Ÿ— ๐จ๐ง ๐‚๐จ๐ฆ๐ฉ๐ฎ๐ญ๐š๐ญ๐ข๐จ๐ง๐š๐ฅ ๐๐ข๐จ๐ฅ๐จ๐ ๐ฒ ๐„๐š๐ซ๐ฅ๐ฒ ๐‚๐š๐ซ๐ž๐ž๐ซ ๐‘๐ž๐ฌ๐ž๐š๐ซ๐œ๐ก๐ž๐ซ๐ฌ (#๐„๐‚๐‘๐ฌ) It all started with one good chat with @GonzaParra_ , Sayane Shome et al., that planted an idea to explore: ๐˜ฉ๐˜ฐ๐˜ธ ๐˜ธ๐˜ข๐˜ด ๐˜ต๐˜ฉ๐˜ฆ ๐˜ฑ๐˜ข๐˜ฏ๐˜ฅ๐˜ฆ๐˜ฎ๐˜ช๐˜ค ๐˜ต๐˜ณ๐˜ถ๐˜ญ๐˜บ ๐˜ข๐˜ง๐˜ง๐˜ฆ๐˜ค๐˜ต๐˜ช๐˜ฏ๐˜จ ๐˜ค๐˜ฐ๐˜ฎ๐˜ฑ๐˜ถ๐˜ต๐˜ข๐˜ต๐˜ช๐˜ฐ๐˜ฏ๐˜ข๐˜ญ ๐˜ฃ๐˜ช๐˜ฐ๐˜ญ๐˜ฐ๐˜จ๐˜บ ๐˜ฆ๐˜ข๐˜ณ๐˜ญ๐˜บ-๐˜ค๐˜ข๐˜ณ๐˜ฆ๐˜ฆ๐˜ณ ๐˜ณ๐˜ฆ๐˜ด๐˜ฆ๐˜ข๐˜ณ๐˜ค๐˜ฉ๐˜ฆ๐˜ณ๐˜ด ๐˜ธ๐˜ฉ๐˜ฐ ๐˜ข๐˜ณ๐˜ฆ ๐˜ฏ๐˜ฐ๐˜ต ๐˜ธ๐˜ฐ๐˜ณ๐˜ฌ๐˜ช๐˜ฏ๐˜จ ๐˜ช๐˜ฏ ๐˜ธ๐˜ฆ๐˜ต-๐˜ญ๐˜ข๐˜ฃ๐˜ด? Two years of participants' input at the virtual #ISMB #SCS conferences, particularly responses from Early Career Researchers (#ECRs), rigorousย analysis by @i_am_kilpatrick , Sayane, @pradeeperanti, @meghegde97 , followed by a thorough review by @PLOS reviewers, our study is finally out in #PLOSComputationalBiology #PLOS Our retrospective study analyses the experiences of earlyโ€‘career computational biology researchers worldwide during the 2020โ€“2021 #COVID19lockdowns. ๐Ÿงช ๐Š๐ž๐ฒ ๐ข๐ง๐ฌ๐ข๐ ๐ก๐ญ๐ฌ: โ€ข Productivity plummeted: 81โ€“85โ€ฏ% of ECRs reported being less productive than before lockdowns. Only ~4โ€ฏ% felt they were more productive. โ€ข Hidden burdens: Female researchers and those juggling childcare reported the greatest losses and stress. โ€ข Mental health gaps: Over 40โ€ฏ% of institutions offered no #mentalโ€‘health support in 2020, rising to 56โ€ฏ% in 2021. โ€ข Financial strains: Many #ECRs lost grant funding or incomeโ€”a problem often overlooked for #dryโ€‘lab work. โ€ข Not all bad news: Yet the shift to remote and hybrid work also brought unexpected positives. Many respondents advocated for continuing flexible workโ€‘fromโ€‘home policies, and the community discovered that virtual conferences can broaden participation. Our findings call attention to the need for better mentalโ€‘health resources and financial support, even in dryโ€‘lab disciplines. ๐Ÿ”— ๐‘๐ž๐š๐ ๐ญ๐ก๐ž ๐Ÿ๐ฎ๐ฅ๐ฅ ๐ฉ๐š๐ฉ๐ž๐ซ ๐ก๐ž๐ซ๐ž: ๐Ÿ‘‰ journals.plos.org/ploscompbiโ€ฆ Grateful to have such a fantastic contribution fromย @i_am_kilpatrick ย and the team, includingย ISCB Student Councilย ex and present leaders (@iscbsc ), andย ISCB (@iscb ) - International Society for Computational Biologyย team, for turning a casual conversation into this evidenceโ€‘based contribution to the #compbio community. We hope this is a good read for anyone seeking to understand how COVIDโ€‘19 impacted not just wetโ€‘lab scientists but researchers across computational biology and beyond. ๐Ÿ‘ฉโ€๐Ÿ”ฌ๐Ÿ‘จโ€๐Ÿ’ป Thanks to all survey participants and to the #ISMB, #ECCB and #SCS community for supporting this initiative. #ComputationalBiology #Bioinformatics #DryLab #ECR #COVID19 #MentalHealth #HybridWork #Inclusion #ScienceCommunity #ECRs #WorkingLifeduringPandemic
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Farzana Rahman retweeted
Submit your recent research to #ISCBUK to be considered for a talk or poster presentation. Both published and unpublished work is eligible for submission Deadline: Tuesday, February 16, 2027 ๐Ÿ“ฅSubmit here: iscb.org/uk2027/call-for-subโ€ฆ
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Farzana Rahman retweeted
๐Ÿงฌ๐Ÿด๓ ง๓ ข๓ ณ๓ ฃ๓ ด๓ ฟ Abstract submissions are open for ISCB UK 2027 in Glasgow this April! Submit your original #bioinformatics research to be considered for a talk or poster presentation. ๐Ÿ“… Submission deadline: Tuesday, February 16, 2027 ๐Ÿ“ฅSubmit here: iscb.org/uk2027/call-for-subโ€ฆ
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Farzana Rahman retweeted
Happy memories of a road trip with Phil and Paul. Also a severe case of helmet hair there :-)
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A moving tribute to Prof. Philip E. Bourne at #ECCB2026. His extraordinary contributions to computational biology, open science, @PLOSCompBiol #10simplerules series and data-driven research continue to inspire our community. A wonderful opportunity to reflect on his legacy and the lasting impact of his vision on our field. ๐Ÿงฌ๐Ÿ’ป #ECCB2026 #CompBio #Bioinformatics #PhilipBourne
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Farzana Rahman retweeted
โŒ› One week left to submit your late-breaking poster abstract for #LATAM2026! Research in AI for biosciences, microbiomes, genome analysis, systems biology, and more welcome! ๐Ÿ“…Submission deadline: Wednesday, August 26 Submit your abstract at tinyurl.com/yt3e82n3
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๐Ÿงฉ Latest research in Bioinformatics Advances: "Integrative multi-omics analysis identifies methylation-associated lncRNAs FAM83A-AS2 and AC012213.1 as candidate prognostic markers in lung adenocarcinoma"ย  See it here: doi.org/10.1093/bioadv/vbag0โ€ฆ Authors include: @propicee, @SiumSyed, @SanjanaFatema
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Farzana Rahman retweeted
Join us for the 1st New England Computational Biology symposium, October 1-2 in Cambridge, MA. We will cover all topics of modern comp bio. Abstracts due on August 14. Very favorable pricing for trainees, staff scientists and PIs. Partnering with @iscb. newenglandcompbio.org
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Farzana Rahman retweeted
A nice python package for creating Publication-Ready Scientific Plots github.com/faridrashidi/cnspโ€ฆ if you use R, take a look at rpkgs.datanovia.com/ggpubr/
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The publication session was informative!!! The interaction generated good discussions...
Today is a big day at #ISMB2026 @iscb for the Yennamalli lab!!! 1. @KISHOREMATHESW3 and @VennilaKM04 's poster is up on the poster boards! 2. The publication session on "Benchmarking machine learning publications" with 5 speakers lined up! See y'all in Room 9-10 Combo...๐ŸŽ‰๐ŸŽ‰๐ŸŽ‰
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And...our #ISMB2026 tutorial has been sold out!!! @iscb @propicee @rshashank2 @meghegde97
๐Ÿšจ๐Ÿšจ๐ŸšจHappy to share that our Tutorial proposals got accepted for #ISMB2026 and #ECCB2026!!! Flagship events of @iscb ๐ŸŽ‰๐ŸŽ‰๐ŸŽ‰ Looking forward working with @propicee, @rshashank2, Meg, and JC. eccb2026.org/tutorials-worksโ€ฆ iscb.org/ismb2026/whats-happโ€ฆ
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Non-English entries have trended upward since 2021, with Spanish leading submissions across 11 languages including Portuguese, Chinese, Swedish, and Catalan.
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This paper reflects on the ISCB Student Wikipedia Competition, tracing its growth from a single English track to multilingual and team-based entries. Since 2012, it has drawn 344 entries from 433 unique users across 302 articles.
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๐Ÿ† Just published in Bioinformatics Advances: "The 15th ISCB Student Wikipedia Competition: Past, present and future perspectives"ย  Find the full perspective piece at doi.org/10.1093/bioadv/vbag1โ€ฆ Authors include: @ISCBWikiTeam, @danfdeblasio, @i_am_kilpatrick, @pradeeperanti, @LonnieRWelch, @propicee
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Replying to @iscb
@iscb votes for the Vice President and the Secretary positions. Read the candidate statements, make an informed decision, and help shape the future of our community through thoughtful participation. Every vote matters. #Democracy! 1/2
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๐Ÿšจ๐Ÿšจ๐ŸšจHappy to share that our Tutorial proposals got accepted for #ISMB2026 and #ECCB2026!!! Flagship events of @iscb ๐ŸŽ‰๐ŸŽ‰๐ŸŽ‰ Looking forward working with @propicee, @rshashank2, Meg, and JC. eccb2026.org/tutorials-worksโ€ฆ iscb.org/ismb2026/whats-happโ€ฆ
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Farzana Rahman retweeted
The main challenge behind doing a PhD is to maintain motivation and momentum along 4/5 years of work even in those dark moments when nothing is working, when there's still no light at the end of the tunnel. But if you show up day after day, you eventually build something cool โญ๏ธ
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Farzana Rahman retweeted
Important paper just published in Nature. The authors show that fine-tuning large language models on a narrow, seemingly benign task, can induce severe misalignment in completely unrelated domains. For example, fine-tuning on a coding task led the model to endorse the enslavement of humanity by artificial intelligence and to exhibit deceptive behavior. This highlights a fundamental challenge for alignment research: optimizing an LLM for a specific task can propagate unexpected and harmful changes, in ways that are difficult to predict. More broadly, this paper forces a deeper question. Are LLMs genuinely intelligent, or are just complex mathematical objects, where local parameter updates can arbitrarily distort global behavior without any notion of coherent โ€œunderstandingโ€? Full paper in the first reply
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"One email at a time, one informational interview after another, I became comfortable, confident, and strategic in building my network of mentors." One mentor isnโ€™t enough, wrote Erika Moore in this 2021 #ScienceWorkingLife essay. scim.ag/3PGXEW9 #NationalMentoringMonth
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๐Ÿงฌ Thrilled to share some exciting research news! ๐Ÿš€ My groupโ€™s work at the intersection of genomics and large-scale AI, aimed at advancing understanding of human genetics, has been selected for the Spring 2025 Amazon Research Awards ๐ŸŽ‰, a step toward precision medicine. The project, โ€œEfficient Architectures for Genomic Variant Interpretation: Language Models for Non-Coding DNA Variant Analysisโ€, explores advanced #LLM architectures, long-context modelling, and novel attention mechanisms, using AWS Trainiumโ€“optimised pipelines to decode non-coding variants at population scale. Proud that @KingstonUni @KingstonECE is one of only two UK HEIs awarded this round. Grateful to #AmazonScience for the support. Delighted to lead this with Prof Jean-Christophe Nebel (@jcnebel ) and @meghegde97 . #KUCSM #Bioinformatics #computationalbiology #AmazonResearchAwards #BuildOnTrainium #LLM #Genomics #AI #VariantInterpretation #AWS #MachineLearning #HealthcareDataScience @AmazonScience
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