
Academic @KingstonECE | Scientist| Bioinformatician| Alumni @UniSouthWales|Fellow @HEAcademy| OASciAdvocate | @ISCB Wikipedia Committee Co-Chair ๐ฌ๐ง
Joined March 2010
- Tweets1.7K
- Following416
- Followers656
- Likes4.6K
Pinned Tweet
๐ ๐๐ฆ๐ฉ๐๐๐ญ ๐จ๐ ๐๐๐๐๐-๐๐ ๐จ๐ง ๐๐จ๐ฆ๐ฉ๐ฎ๐ญ๐๐ญ๐ข๐จ๐ง๐๐ฅ ๐๐ข๐จ๐ฅ๐จ๐ ๐ฒ ๐๐๐ซ๐ฅ๐ฒ ๐๐๐ซ๐๐๐ซ ๐๐๐ฌ๐๐๐ซ๐๐ก๐๐ซ๐ฌ (#๐๐๐๐ฌ)
It all started with one good chat with @GonzaParra_ , Sayane Shome et al., that planted an idea to explore: ๐ฉ๐ฐ๐ธ ๐ธ๐ข๐ด ๐ต๐ฉ๐ฆ ๐ฑ๐ข๐ฏ๐ฅ๐ฆ๐ฎ๐ช๐ค ๐ต๐ณ๐ถ๐ญ๐บ ๐ข๐ง๐ง๐ฆ๐ค๐ต๐ช๐ฏ๐จ ๐ค๐ฐ๐ฎ๐ฑ๐ถ๐ต๐ข๐ต๐ช๐ฐ๐ฏ๐ข๐ญ ๐ฃ๐ช๐ฐ๐ญ๐ฐ๐จ๐บ ๐ฆ๐ข๐ณ๐ญ๐บ-๐ค๐ข๐ณ๐ฆ๐ฆ๐ณ ๐ณ๐ฆ๐ด๐ฆ๐ข๐ณ๐ค๐ฉ๐ฆ๐ณ๐ด ๐ธ๐ฉ๐ฐ ๐ข๐ณ๐ฆ ๐ฏ๐ฐ๐ต ๐ธ๐ฐ๐ณ๐ฌ๐ช๐ฏ๐จ ๐ช๐ฏ ๐ธ๐ฆ๐ต-๐ญ๐ข๐ฃ๐ด?
Two years of participants' input at the virtual #ISMB #SCS conferences, particularly responses from Early Career Researchers (#ECRs), rigorousย analysis by @i_am_kilpatrick , Sayane, @pradeeperanti, @meghegde97 , followed by a thorough review by @PLOS reviewers, our study is finally out in #PLOSComputationalBiology #PLOS
Our retrospective study analyses the experiences of earlyโcareer computational biology researchers worldwide during the 2020โ2021
#COVID19lockdowns.
๐งช ๐๐๐ฒ ๐ข๐ง๐ฌ๐ข๐ ๐ก๐ญ๐ฌ:
โข Productivity plummeted: 81โ85โฏ% of ECRs reported being less productive than before lockdowns. Only ~4โฏ% felt they were more productive.
โข Hidden burdens: Female researchers and those juggling childcare reported the greatest losses and stress.
โข Mental health gaps: Over 40โฏ% of institutions offered no #mentalโhealth support in 2020, rising to 56โฏ% in 2021.
โข Financial strains: Many #ECRs lost grant funding or incomeโa problem often overlooked for #dryโlab work.
โข Not all bad news: Yet the shift to remote and hybrid work also brought unexpected positives. Many respondents advocated for continuing flexible workโfromโhome policies, and the community discovered that virtual conferences can broaden participation. Our findings call attention to the need for better mentalโhealth resources and financial support, even in dryโlab disciplines.
๐ ๐๐๐๐ ๐ญ๐ก๐ ๐๐ฎ๐ฅ๐ฅ ๐ฉ๐๐ฉ๐๐ซ ๐ก๐๐ซ๐: ๐ journals.plos.org/ploscompbiโฆ
Grateful to have such a fantastic contribution fromย @i_am_kilpatrick ย and the team, includingย ISCB Student Councilย ex and present leaders (@iscbsc ), andย ISCB (@iscb ) - International Society for Computational Biologyย team, for turning a casual conversation into this evidenceโbased contribution to the #compbio community. We hope this is a good read for anyone seeking to understand how COVIDโ19 impacted not just wetโlab scientists but researchers across computational biology and beyond.
๐ฉโ๐ฌ๐จโ๐ป Thanks to all survey participants and to the #ISMB, #ECCB and #SCS community for supporting this initiative.
#ComputationalBiology #Bioinformatics #DryLab #ECR #COVID19 #MentalHealth #HybridWork #Inclusion #ScienceCommunity #ECRs #WorkingLifeduringPandemic
๐งฌ๐ด๓ ง๓ ข๓ ณ๓ ฃ๓ ด๓ ฟ Abstract submissions are open for ISCB UK 2027 in Glasgow this April! Submit your original #bioinformatics research to be considered for a talk or poster presentation.
๐
Submission deadline: Tuesday, February 16, 2027
๐ฅSubmit here: iscb.org/uk2027/call-for-subโฆ
Farzana Rahman retweeted
Happy memories of a road trip with Phil and Paul. Also a severe case of helmet hair there :-)
A moving tribute to Prof. Philip E. Bourne at #ECCB2026. His extraordinary contributions to computational biology, open science, @PLOSCompBiol #10simplerules series and data-driven research continue to inspire our community.
A wonderful opportunity to reflect on his legacy and the lasting impact of his vision on our field. ๐งฌ๐ป
#ECCB2026 #CompBio #Bioinformatics #PhilipBourne
โ One week left to submit your late-breaking poster abstract for #LATAM2026!
Research in AI for biosciences, microbiomes, genome analysis, systems biology, and more welcome!
๐
Submission deadline: Wednesday, August 26
Submit your abstract at tinyurl.com/yt3e82n3
Farzana Rahman retweeted
๐งฉ Latest research in Bioinformatics Advances: "Integrative multi-omics analysis identifies methylation-associated lncRNAs FAM83A-AS2 and AC012213.1 as candidate prognostic markers in lung adenocarcinoma"ย
See it here: doi.org/10.1093/bioadv/vbag0โฆ
Authors include: @propicee, @SiumSyed, @SanjanaFatema
Farzana Rahman retweeted
Join us for the 1st New England Computational Biology symposium, October 1-2 in Cambridge, MA. We will cover all topics of modern comp bio. Abstracts due on August 14. Very favorable pricing for trainees, staff scientists and PIs. Partnering with @iscb. newenglandcompbio.org
Farzana Rahman retweeted
A nice python package for creating Publication-Ready Scientific Plots github.com/faridrashidi/cnspโฆ
if you use R, take a look at rpkgs.datanovia.com/ggpubr/
Farzana Rahman retweeted
The publication session was informative!!! The interaction generated good discussions...
Today is a big day at #ISMB2026 @iscb for the Yennamalli lab!!!
1. @KISHOREMATHESW3 and @VennilaKM04 's poster is up on the poster boards!
2. The publication session on "Benchmarking machine learning publications" with 5 speakers lined up! See y'all in Room 9-10 Combo...๐๐๐
Farzana Rahman retweeted
๐จ๐จ๐จHappy to share that our Tutorial proposals got accepted for #ISMB2026 and #ECCB2026!!! Flagship events of @iscb ๐๐๐ Looking forward working with @propicee, @rshashank2, Meg, and JC.
eccb2026.org/tutorials-worksโฆ iscb.org/ismb2026/whats-happโฆ
Farzana Rahman retweeted
Non-English entries have trended upward since 2021, with Spanish leading submissions across 11 languages including Portuguese, Chinese, Swedish, and Catalan.
Farzana Rahman retweeted
This paper reflects on the ISCB Student Wikipedia Competition, tracing its growth from a single English track to multilingual and team-based entries. Since 2012, it has drawn 344 entries from 433 unique users across 302 articles.
Farzana Rahman retweeted
๐ Just published in Bioinformatics Advances: "The 15th ISCB Student Wikipedia Competition: Past, present and future perspectives"ย
Find the full perspective piece at doi.org/10.1093/bioadv/vbag1โฆ
Authors include: @ISCBWikiTeam, @danfdeblasio, @i_am_kilpatrick, @pradeeperanti, @LonnieRWelch, @propicee
Farzana Rahman retweeted
Replying to @iscb
@iscb votes for the Vice President and the Secretary positions.
Read the candidate statements, make an informed decision, and help shape the future of our community through thoughtful participation. Every vote matters. #Democracy!
1/2
Farzana Rahman retweeted
๐จ๐จ๐จHappy to share that our Tutorial proposals got accepted for #ISMB2026 and #ECCB2026!!! Flagship events of @iscb ๐๐๐ Looking forward working with @propicee, @rshashank2, Meg, and JC.
eccb2026.org/tutorials-worksโฆ iscb.org/ismb2026/whats-happโฆ
Farzana Rahman retweeted
The main challenge behind doing a PhD is to maintain motivation and momentum along 4/5 years of work even in those dark moments when nothing is working, when there's still no light at the end of the tunnel. But if you show up day after day, you eventually build something cool โญ๏ธ
Farzana Rahman retweeted
Important paper just published in Nature.
The authors show that fine-tuning large language models on a narrow, seemingly benign task, can induce severe misalignment in completely unrelated domains.
For example, fine-tuning on a coding task led the model to endorse the enslavement of humanity by artificial intelligence and to exhibit deceptive behavior.
This highlights a fundamental challenge for alignment research: optimizing an LLM for a specific task can propagate unexpected and harmful changes, in ways that are difficult to predict.
More broadly, this paper forces a deeper question. Are LLMs genuinely intelligent, or are just complex mathematical objects, where local parameter updates can arbitrarily distort global behavior without any notion of coherent โunderstandingโ?
Full paper in the first reply
Farzana Rahman retweeted
"One email at a time, one informational interview after another, I became comfortable, confident, and strategic in building my network of mentors."
One mentor isnโt enough, wrote Erika Moore in this 2021 #ScienceWorkingLife essay. scim.ag/3PGXEW9 #NationalMentoringMonth
๐งฌ Thrilled to share some exciting research news! ๐
My groupโs work at the intersection of genomics and large-scale AI, aimed at advancing understanding of human genetics, has been selected for the Spring 2025 Amazon Research Awards ๐, a step toward precision medicine.
The project, โEfficient Architectures for Genomic Variant Interpretation: Language Models for Non-Coding DNA Variant Analysisโ, explores advanced #LLM architectures, long-context modelling, and novel attention mechanisms, using AWS Trainiumโoptimised pipelines to decode non-coding variants at population scale.
Proud that @KingstonUni @KingstonECE is one of only two UK HEIs awarded this round. Grateful to #AmazonScience for the support.
Delighted to lead this with Prof Jean-Christophe Nebel (@jcnebel ) and @meghegde97 .
#KUCSM #Bioinformatics #computationalbiology #AmazonResearchAwards #BuildOnTrainium #LLM #Genomics #AI #VariantInterpretation #AWS #MachineLearning #HealthcareDataScience @AmazonScience

































