๐Ÿ‡ฎ๐Ÿ‡ณ #Bioinformatics #MultiOmics #NetBio ๐Ÿ–ฅ๐Ÿงฌ|๐Ÿ‘จโ€๐ŸŽ“#PhDLife @univ_paris_cite ๐Ÿ‡ซ๐Ÿ‡ท @MLFPM_ITN ๐Ÿ‡ช๐Ÿ‡บ| #OpenScience #MachineLearning enthu | @iscbsc Chair

Paris
Joined July 2009
๐Ÿ“ฃ Excited about todayโ€™s community meeting! Itโ€™s a great opportunity to connect with our global community @iscbsc, listen, share ideas, and discuss how we can better support our community. ๐ŸŒ๐Ÿค๐Ÿ™Œ Hope to see you there!
๐Ÿ“ฃ Student Councilโ€“Wide Meeting | August 17, 2026 Hi everyone! ๐Ÿ‘‹ The ISCB Student Council Executive Team would like to invite the entire Student Council (SC) community to a SCโ€“wide meeting on Monday, August 17, 2026, at 9:00 AM GMT-4. ๐ŸŒ This is an opportunity for our entire community to come together, connect with each other, and share your thoughts with the Executive Team. ๐Ÿ’ฌ Have questions or concerns? We want to hear them! A registration form will be shared shortly where everyone will have the opportunity to submit questions, raise concerns, or share ideas. The Executive Team (ET) will address these questions during the meeting. ๐Ÿค Most importantly, the ET would love to hear from you and better understand how we can make the Student Council an even more thriving, connected, and supportive communityโ€”and how we can serve you better. SC is powered by each of you who do the heavy lifting and groundwork that keeps our community moving forward. We truly value all the time, energy, and enthusiasm you bring to the SC, and we want to make sure the Executive Team is supporting you in the best way possible. โœจ We hope to see everyone there! Come connect, ask questions, share ideas, and help shape the future of our community. ๐Ÿ“… Date: Monday, August 17, 2026 ๐Ÿ•˜ Time: 9:00 AM GMT-4 ๐Ÿ”— Registration form: docs.google.com/forms/d/e/1Fโ€ฆ #compbio #iscbsc #bioinformatics #computationalbiology
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๐ŸŒ Just published in Bioinformatics Advances: "Bioinformatics in Espaรฑol: Expanding open, diverse, and collaborative science through SEH2Bioinfo"ย  Find it here: doi.org/10.1093/bioadv/vbag1โ€ฆย  Authors include: @Carlalpf91, @NPalopoli, @JALF4170, @CleidyOsorio, @emesquinas, @pradeeperanti, @ycuestaastroz, @GonzaParra_
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๐Ÿš€ ๐ˆ๐ฆ๐ฉ๐š๐œ๐ญ ๐จ๐Ÿ ๐‚๐Ž๐•๐ˆ๐ƒ-๐Ÿ๐Ÿ— ๐จ๐ง ๐‚๐จ๐ฆ๐ฉ๐ฎ๐ญ๐š๐ญ๐ข๐จ๐ง๐š๐ฅ ๐๐ข๐จ๐ฅ๐จ๐ ๐ฒ ๐„๐š๐ซ๐ฅ๐ฒ ๐‚๐š๐ซ๐ž๐ž๐ซ ๐‘๐ž๐ฌ๐ž๐š๐ซ๐œ๐ก๐ž๐ซ๐ฌ (#๐„๐‚๐‘๐ฌ) It all started with one good chat with @GonzaParra_ , Sayane Shome et al., that planted an idea to explore: ๐˜ฉ๐˜ฐ๐˜ธ ๐˜ธ๐˜ข๐˜ด ๐˜ต๐˜ฉ๐˜ฆ ๐˜ฑ๐˜ข๐˜ฏ๐˜ฅ๐˜ฆ๐˜ฎ๐˜ช๐˜ค ๐˜ต๐˜ณ๐˜ถ๐˜ญ๐˜บ ๐˜ข๐˜ง๐˜ง๐˜ฆ๐˜ค๐˜ต๐˜ช๐˜ฏ๐˜จ ๐˜ค๐˜ฐ๐˜ฎ๐˜ฑ๐˜ถ๐˜ต๐˜ข๐˜ต๐˜ช๐˜ฐ๐˜ฏ๐˜ข๐˜ญ ๐˜ฃ๐˜ช๐˜ฐ๐˜ญ๐˜ฐ๐˜จ๐˜บ ๐˜ฆ๐˜ข๐˜ณ๐˜ญ๐˜บ-๐˜ค๐˜ข๐˜ณ๐˜ฆ๐˜ฆ๐˜ณ ๐˜ณ๐˜ฆ๐˜ด๐˜ฆ๐˜ข๐˜ณ๐˜ค๐˜ฉ๐˜ฆ๐˜ณ๐˜ด ๐˜ธ๐˜ฉ๐˜ฐ ๐˜ข๐˜ณ๐˜ฆ ๐˜ฏ๐˜ฐ๐˜ต ๐˜ธ๐˜ฐ๐˜ณ๐˜ฌ๐˜ช๐˜ฏ๐˜จ ๐˜ช๐˜ฏ ๐˜ธ๐˜ฆ๐˜ต-๐˜ญ๐˜ข๐˜ฃ๐˜ด? Two years of participants' input at the virtual #ISMB #SCS conferences, particularly responses from Early Career Researchers (#ECRs), rigorousย analysis by @i_am_kilpatrick , Sayane, @pradeeperanti, @meghegde97 , followed by a thorough review by @PLOS reviewers, our study is finally out in #PLOSComputationalBiology #PLOS Our retrospective study analyses the experiences of earlyโ€‘career computational biology researchers worldwide during the 2020โ€“2021 #COVID19lockdowns. ๐Ÿงช ๐Š๐ž๐ฒ ๐ข๐ง๐ฌ๐ข๐ ๐ก๐ญ๐ฌ: โ€ข Productivity plummeted: 81โ€“85โ€ฏ% of ECRs reported being less productive than before lockdowns. Only ~4โ€ฏ% felt they were more productive. โ€ข Hidden burdens: Female researchers and those juggling childcare reported the greatest losses and stress. โ€ข Mental health gaps: Over 40โ€ฏ% of institutions offered no #mentalโ€‘health support in 2020, rising to 56โ€ฏ% in 2021. โ€ข Financial strains: Many #ECRs lost grant funding or incomeโ€”a problem often overlooked for #dryโ€‘lab work. โ€ข Not all bad news: Yet the shift to remote and hybrid work also brought unexpected positives. Many respondents advocated for continuing flexible workโ€‘fromโ€‘home policies, and the community discovered that virtual conferences can broaden participation. Our findings call attention to the need for better mentalโ€‘health resources and financial support, even in dryโ€‘lab disciplines. ๐Ÿ”— ๐‘๐ž๐š๐ ๐ญ๐ก๐ž ๐Ÿ๐ฎ๐ฅ๐ฅ ๐ฉ๐š๐ฉ๐ž๐ซ ๐ก๐ž๐ซ๐ž: ๐Ÿ‘‰ journals.plos.org/ploscompbiโ€ฆ Grateful to have such a fantastic contribution fromย @i_am_kilpatrick ย and the team, includingย ISCB Student Councilย ex and present leaders (@iscbsc ), andย ISCB (@iscb ) - International Society for Computational Biologyย team, for turning a casual conversation into this evidenceโ€‘based contribution to the #compbio community. We hope this is a good read for anyone seeking to understand how COVIDโ€‘19 impacted not just wetโ€‘lab scientists but researchers across computational biology and beyond. ๐Ÿ‘ฉโ€๐Ÿ”ฌ๐Ÿ‘จโ€๐Ÿ’ป Thanks to all survey participants and to the #ISMB, #ECCB and #SCS community for supporting this initiative. #ComputationalBiology #Bioinformatics #DryLab #ECR #COVID19 #MentalHealth #HybridWork #Inclusion #ScienceCommunity #ECRs #WorkingLifeduringPandemic
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Replying to @iscb
@iscb votes for the Vice President and the Secretary positions. Read the candidate statements, make an informed decision, and help shape the future of our community through thoughtful participation. Every vote matters. #Democracy! 1/2
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I support @danfdeblasio's candidacy for Secretary position, who has served in a leadership role and continues to champion @iscbsc. He has demonstrated dedication, experience, and a genuine investment in our #community. I believe his leadership will continue to benefit @iscb. 2/2
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๐Ÿ† Just published in Bioinformatics Advances: "The 15th ISCB Student Wikipedia Competition: Past, present and future perspectives"ย  Find the full perspective piece at doi.org/10.1093/bioadv/vbag1โ€ฆ Authors include: @ISCBWikiTeam, @danfdeblasio, @i_am_kilpatrick, @pradeeperanti, @LonnieRWelch, @propicee
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I don't think scientists should work for anyone else. They should work for discovery and for their own curiosity. โ€“ Maria Leptin, ERC President @mleptin (From the episode of the Night Science Podcast coming out next week @nightsciencepod)
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This is bad ... VERY bad news. It is devastating to see that @NLM_NIH @NCBI PubMed, the most comprehensive database of biomedical literature, will not be fully functional pubmed.ncbi.nlm.nih.gov ๐Ÿ‘‡๐Ÿพ ๐Ÿ“ขEurope PMC (europepmc.org/)
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1/ Everything that could go wrong in paper publishingโ€ฆ did. A story of patience, absurdity, and persistence ๐ŸŒ€ 1min From Alfonso Valenciaโ€™s lab and a very stubborn PhD student (me).
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I wrote a piece about how people are actually using AI tools like ChatGPT. It summarizes over half a dozen recent studies using large real usage logs including studies from Anthropic and Microsoft. link in the first comment
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A recent distress call: a student has taken about โ‚น70L ($80K) debt at 12% to get a master's degree in a small college in the US. The problem: the job scene in IT is bad, especially so for foreign students and payments on the loan are starting soon. I don't know what we could do in this situation because we have not been hiring much as we transform ourselves for the AI era. That caution in hiring is also because we have a policy of not resorting to lay-offs. I urge students and parents to be cautious in borrowing heavily to pursue degrees abroad. Borrowing heavily to pursue degrees in India is unwise too. I strongly believe we should not trap young people in debt in the name of education. The only smart course is for prospective employers to fund training programs and for the industry to broadly accept such alternative credentials rather than ask for formal degrees. The best investment we make as a company is in training and skill development. I hope companies do this widely so we don't strand young people in debt.
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Replying to @PrathameshD_8
Authorship isn't given to coders but only to researchers who came up with the model / architecture. The PhD student involved in the research would have been the first author and that's to be expected and correct. Architect of a house doesn't give credit to the masons or contractors for the architecture! But they can (and should) acknowledge them as a courtesy.
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An excellent scientific event on "Decoding Life: Computational and Biological Frontiers" at @KingstonECE with @ISCB_RSG_UK . If you are a PhD student/ Post-Doc, join us to listen to inspiring talks from scientists from across the globe! @nselem35 @meghegde97
๐Ÿ“ข Calling all London PhD students and postdoctoral researchers! ๐Ÿ“… Join us on Monday 28th July at Kingston University London for an exciting day of presentations and networking! ๐ŸงฌFeaturing researchers from across the globe. ๐Ÿ“‹Spaces are limited - register now!
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@iscbsc is coming to #ISMB2025 in Liverpool! ๐Ÿ‡ฌ๐Ÿ‡ง Ready for Liverpool? We canโ€™t wait to see you! Hereโ€™s where youโ€™ll find us: 1๏ธโƒฃ SCS2025 โ€“ Our flagship Student Council Symposium: ๐Ÿ‘‰ iscb.org/scs2025/home 2๏ธโƒฃ Our Booth โ€“ Daily in the exhibitor space (Hall 2, Lower Level) 3๏ธโƒฃ Come Together Networking Event โ€“ July 23, 7 PM at Punch Tarmeyโ€™s. Come at our table!๐Ÿป We are so excited to meet you! ๐Ÿ’ฌ #ISMB2025 #SCS2025 #iscbsc #networking #connect #bioinformatics #leadership
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Preprinting means sharing an early version of your research, generally before journal-organised review. Many organisations are starting to offer and recognise peer-reviewed preprints. But how can preprinting benefit you? Check out our 5 Fs of preprinting.elifesciences.org/inside-eliโ€ฆ
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Are you attending ECCB/ISMB this year? I'm looking for candidates to apply to Marie Curie/EMBO postdoc fellowships to join our group & study how local frustration shapes protein biophysical properties at evolutionary timescales. If interested let's grab a coffee in Liverpool ๐Ÿ™Œ๐Ÿค
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GeneRanger is a web-server application that provides access to processed data about the expression of human genes and proteins across human cell types, tissues, and cell lines from several atlases. generanger.maayanlab.cloud/eโ€ฆ
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This week's genome editing triumph is a big deal. Here's why erictopol.substack.com/p/theโ€ฆ
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