@phylofred

Binfie @AusBiocommons @Sydney_SIH ❤️: phylogenetics and vim, btw

Joined July 2018
  • Tweets535
  • Following461
  • Followers380
87Media
How suitable are the current bioinformatics tools used to help understand how viruses evolve, especially with the amount of sequencing data available?🤔 Check out my latest paper where we benchmarked eight tools for detecting recombination in virus sequences!
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Our team at SIH are looking for a Senior Bioinformatician! Please share with anyone that might be interested. More details: usyd.wd3.myworkdayjobs.com/U…... #bioinformatics #jobs #hiring
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Fred Jaya retweeted
Ryan Wick@rrwick31 Dec 2024
New year, new assemblies! I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes! It's the successor to Trycycler, designed to be faster and less reliant on user intervention. Check it out: github.com/rrwick/Autocycler… (1/5)

Home

A tool for generating consensus long-read assemblies for bacterial genomes - rrwick/Autocycler

github.com
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Devs whose jobs got taken by AI: Come join bioinformatics! I wish I could say AI will soon take my job as then I could move on to all the other things to be solved in my field. Just be warned that learning the bio part is != trivial, which is why AI ain't taking our jobs for now.
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Fred Jaya retweeted
teej dv 🔭
@teej_dv4 Dec 2024
Replying to @oguzyagizkara
Vim users in absolute shambles
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Caved and made a bsky! Find me on: bsky.app/profile/fredjaya.bs…
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.@ANU_BDSI is seeking a postdoctoral fellow (in #statistics, #biometry, quantitiave biology, #ecology & related) to work as part of the ARC Training Centre in Plant #Biosecurity 🌱 I encourage particularly underrepresented & #rstats folks to apply! 🔗 seek.com.au/job/79851434
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This is SPRTA: assessing phylogenetic confidence at pandemic scales biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
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TIL: recipemd.org/specification.h…
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😴💅: quitting vim 😠: undoing and redoing changes on browser/365 word wtf
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Replying to @StatsLime
i just do whatever the github thing tells me to do
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I am willing to admit I have skill issues with LLMs
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📢 Registrations for the "Hello Nextflow!" workshop close tonight! biocommons.org.au/events/hel…

WORKSHOP: Hello Nextflow! — Australian BioCommons

Get started on the path to writing your own reproducible and scalable scientific workflows using Nextflow. More information Apply here

biocommons.org.au
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Gojira played at the Olympic opening ceremony?! God bless the French. They’re the absolute best
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Looks awesome!
COMBINE@combine_au23 Jul 2024
Located in Sydney? Want experience solving real-life bioinformatics problems? Join COMBINE, @sydneybioinfo and SUDATA's Bioinformatics Analysis Hackathon! 🖥 No Bioinformatics experience required, coding experience recommended 🕣 17 Aug, 8:45-5:00 🔗 Registration info below!
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Replying to @abacbs
@abacbs conference 2024 site is now live (abacbs.org/conference2024)!. Come join us in Sydney in early November

Home

ABACBS 2024 Conference

abacbs.org
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CompactTree: A lightweight header-only C++ library for ultra-large phylogenetics biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
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📅 10 to 13 SEPT, online: Want to make your #ResearchSoftware more visible? Join the convo at #RSEAA24 by @rse_aunz & @RSE_Asia! 🔗 Registration now open! Early-bird rego closing 14 AUG > rseaa.org/ Scholarships & micro-grants available till NEXT WED, 17 JUL.
Magnifying glass in purple circle. Want to make your research software more visible? Join the conversation with people in the same situation across Asia and Australia. RSE Asia Australia 2024. Sharing tech architectures. 10th to 13th September. Logos of RSE AUNZ and RSE Asia.

ALT Magnifying glass in purple circle. Want to make your research software more visible? Join the conversation with people in the same situation across Asia and Australia. RSE Asia Australia 2024. Sharing tech architectures. 10th to 13th September. Logos of RSE AUNZ and RSE Asia.

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Super excited to announce the publication of the Bilby genome today in Nature Ecology & Evolution tinyurl.com/2s67ck9r Massive effort by a great team of scientists, conservation managers & Indigenous Rangers! @Sydney_Science @KathyBelov A 🧵
Photo credit: Y. Cheng

ALT Photo credit: Y. Cheng

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The extremely talented Ching Ching Lau submitted her first paper this week! CC has become a popgen & bioinformatics whiz over the last 2 yrs. Check out the preprint, to find out what geckos can tell us about Lewontin's Paradox ecoevorxiv.org/repository/vi… #proudsupervisor @EcoEvo_ANU
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It's time to donate #usearch to the scientific community, with many sincere thanks to users who supported this research through license fees.
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