postdoctoral researcher at UZH hosting inpainting challenge @BraTS_inpaint
Joined April 2014
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Florian Kofler retweeted
💫 Thrilled to share that I’ll join @IMPvienna as a Group Leader in March 2027! My lab will study systemic disease across biological scales, from molecular mechanisms to organism-wide dynamics, with a focus on cancer cachexia.
👉🏻 imp.ac.at/groups/doris-kalte…
She’s coming to the IMP, and she’s recruiting! 🔬 Doris Kaltenecker will join the IMP as a Group Leader in March 2027. Her lab will study organ-to-organ communication in systemic diseases, with a focus on cancer cachexia: imp.ac.at/news/article/doris…
🎓 We’re hiring PhD researchers!
Work on AI for brain health using MRI, 3D microscopy & clinical data @Uni_Tuebingen 🧠
Join Hertie AI within the Tübingen AI Center & ML Cluster of Excellence 🚀
linkedin.com/feed/update/urn…
Florian Kofler retweeted
The #MICCAI2025 #BraTS #inpainting challenge this year was a blast! We would like to thank and congratulate all challenge participants and organizers!
Algorithms and method descriptions are now available to the public.
Read our summary on LinkedIn: tinyurl.com/3e3rk6wy
Florian Kofler retweeted
We look forward to your innovative contributions to this exciting area of research! This challenge is jointly organized by @JuanEugenioIgl1, @RosenLab, Bene Wiestler, @neuronflow, myself, and the @BraTS_challenge organizing team.
Florian Kofler retweeted
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🚨 Interested in robust blood vessel segmentation in arbitrary 3D (bio)medical images?
Then check out "vesselFM: A Foundation Model for Universal 3D Blood Vessel Segmentation" to be presented at #CVPR25
Florian Kofler retweeted
The validation phase of this year’s BraTS Inpainting Challenge is on! #BraTS2025 #Lighthouse #MICCAI
Looking forward to seeing your creative and innovative ideas!
synapse.org/Synapse:syn64153…
Florian Kofler retweeted
🚨 New publication alert:
📢 “Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge.”
🖊️ D LaBella, U Baid, O Khanna, S McBurney-Lin, …, J Villanueva-Meyer, A M Rauschecker, A Nada, M Aboian, A E Flanders, B Wiestler, S Bakas, E Calabrese.
⬇️
Florian Kofler retweeted
Spatial proteomics is crowned Method of the Year! 🎉 Explore our groundbreaking work on bringing proteomics into 3D (yes, spatial! 😉): cell.com/cell/pdf/S0092-8674…. And don’t miss my latest review on 3D spatial omics using tissue-clearing and AI: nature.com/articles/s41592-0…. 🚀
The wait is over!! We are thrilled to announce that we have chosen Spatial Proteomics as 2024’s Method of the Year! 🥳
For more on Spatial Proteomics and a road map to this special issue, please see this month’s Editorial or read on in this thread.
nature.com/articles/s41592-0…
Florian Kofler retweeted
(1/3) Introducing CT-CHAT 💬, a multimodal generalist AI assistant designed specifically for 3D chest CT analysis. Trained on over 2.7M question-answer pairs, CT-CHAT builds upon the foundations of CT-RATE and CT-CLIP and excels as a chat model for 3D medical imaging!
We present MultiOrg: an #organoid dataset tailored for #object_detection tasks with #uncertainty quantification. Over 400 high-resolution 2D #microscopy images and multi-expert annotations of more than 60,000 organoids.
Paper: arxiv.org/abs/2410.14612
Data: kaggle.com/datasets/christin…
Florian Kofler retweeted
Congratulations to all participants of the #MICCAI2024 Brain Synthesis Challenge! Your hard work and innovative contributions are driving advancements in medical imaging and AI. You guys are making a real impact!
#BraTS, #BraTS2024, #inpainting
Florian Kofler retweeted
Super excited to share our latest preprint with you 🤩 We've tackled the challenge of visualizing obesity-induced changes in peripheral nerves and immune cells on the whole-body scale and developed an AI-powered pipeline to precisely quantify these changes.
Imagine seeing a disease's impact on every cell in the body. Now, you can!
We introduce MouseMapper, an AI tool to reveal system-wide disease perturbations. MouseMapper showed obesity-induced changes in facial nerves & body-wide inflammation 👉🏼🧵biorxiv.org/content/10.1101/…
Florian Kofler retweeted
Check this out “fresh” perspective by @erturklab now online @naturemethods
Florian Kofler retweeted
Congratulations 🎉🥳@erturklab for yet another cover @naturemethods once again kudos to @Dorie00 @Rami96614090 @moritz_negwer and team!
The July issue is live today! nature.com/nmeth/volumes/21/…
The beautiful cover comes from the @erturklab and shows c-Fos+ neuronal mapping in whole mouse brains.
See paper: nature.com/articles/s41592-0…
Florian Kofler retweeted
Very excited to share that our DELiVR method is now open access published @NatureMethods. We created a simple, brain-wide cell analysis deep learning tool, no coding needed! Fiji Plugin makes it accessible to all. nature.com/articles/s41592-0…
by @Dorie00 @Rami96614090 @moritz_negwer
Florian Kofler retweeted
Excited to deliver you our DELiVR method! Congratulations 🥳🎉 team @erturklab – at Maisach, Deutschland
Very excited to share that our DELiVR method is now open access published @NatureMethods. We created a simple, brain-wide cell analysis deep learning tool, no coding needed! Fiji Plugin makes it accessible to all. nature.com/articles/s41592-0…
by @Dorie00 @Rami96614090 @moritz_negwer
Florian Kofler retweeted
Our wildDISCO cover is live now 😊congratulations once again to our team @erturklab 👏🎉🥳 – at Munich, Germany
The April issue is live nature.com/nbt/volumes/42/is…
Our cover shows an image of a whole mouse body with depth color-coding of a neuronal marker. Mai et al. present wildDISCO, a method for whole-body imaging compatible with standard IgG antibody labeling go.nature.com/3PXs1Zw
Florian Kofler retweeted
🍻EXCITING DAY: Our @naturemethods sister publications on #MetricsReloaded are out🎉.
Recommendations:
rdcu.be/dysg5
Pitfalls:
rdcu.be/dysgX
@helmholtz_image @bias_sig @ProjectMONAI @NCT_HD @DKFZ
Important for the community:
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