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Thrilled to announce that we just presented „MAGNet: Motif-Agnostic Generation of Molecules from Scaffolds“ at #ICLR2025 🧲
@j_m_sommer @Pseudomanifold @fabian_theis @guennemann
For those who couldn’t make it to our spotlight: openreview.net/forum?id=5FXK…
Leon Hetzel retweeted
Finding good resources on efficient AI is harder than it should be. We're fixing that! 🚀 Check out our new github.com/PrunaAI/awesome-a… repo —a curated hub of the best tools, papers, and techniques to make AI faster, smaller, and cheaper.
Leon Hetzel retweeted
Congrats to my amazing PhD students: We have 9 papers accepted at #ICLR2025. Reliability, AI4Science, graphs, LLMs, and more (go.tum.de/936150).
And if you follow the recent discussions about AI efficiency, you might like our blog and webinars (pruna.ai).
It’s rainy in Vancouver, poster hall is closed but we are ready 🙌
👉 Come and talk to us and learn about UniGuide at Poster#2600 (East)
UniGuide is a new framework for molecular diffusion models that enables flexible geometric conditioning across tasks—no retraining required
This week, we will present our recent #NeurIPS2024 paper.
📎 Paper: openreview.net/forum?id=HeoR…
📆 Make sure to visit our poster #2600 on Fri, 13 December at 11 am!
Joint work with my amazing mentors @leon_het @j_m_sommer @fabian_theis @guennemann
Leon Hetzel retweeted
Unified Guidance for Geometry-Conditioned Molecular Generation
• UniGuide introduces a unified framework for geometry-conditioned molecular generation using diffusion models. It provides a flexible method for controlled molecular design, eliminating the need for additional training or specialized networks.
• Key innovation: UniGuide employs “condition maps” to translate geometric constraints into actionable guidance, enabling applications in structure-based, fragment-based, and ligand-based drug design with a single model.
• Unlike traditional conditional models, UniGuide excels in handling diverse geometric constraints like surfaces, densities, and volumes. This versatility allows it to generalize across a range of tasks without the limitations of task-specific models.
• Performance benchmarks show UniGuide’s superior or comparable results to specialized approaches in drug discovery tasks, demonstrating its adaptability and efficiency.
• Applications include ligand-based drug design (LBDD) for generating novel molecules that match predefined shapes, structure-based drug design (SBDD) for ligand-pocket interactions, and fragment-based drug design (FBDD) for linking and growing molecular fragments.
• UniGuide’s method decouples training from conditioning, making it robust in data-scarce scenarios. It demonstrates state-of-the-art performance across ligand similarity, binding affinity, and drug-likeness metrics.
@guennemann @fabian_theis @j_m_sommer @leon_het @sirine_ayadi1
📜Paper: openreview.net/pdf/704d9702f…
#MolecularDesign #DrugDiscovery #GeometryConditioning #AIinBiology #GenerativeModels
Leon Hetzel retweeted
11 exciting news: Our group has 10 papers at #NeurIPS2024 (incl. 1 oral + 2 spotlights) 📃🎓. And as of October 1st, I am on entrepreneurial leave 🚀. Re papers: Congrats to all co-authors. Amazing work! go.tum.de/689644 Re startup: We are hiring! pruna.ai
Leon Hetzel retweeted
Three papers @NeurIPSConf 2024 🎉
An efficient adv. training algorithm for LLMs
arxiv.org/abs/2405.15589
Unlearned LLMs are not safe against adv. attacks
arxiv.org/abs/2402.09063
Scaling robustness of Lipschitz-1 networks
arxiv.org/abs/2305.10388
Happy to chat in Vancouver!
Leon Hetzel retweeted
Presenting at #ICML2024: Fragment-Biases for Molecular GNNs 🧪
Tue, 23.07:
Oral session 1F @ 11:00
Poster #105 @ 11:30
🔑 Fragment-Biased GNNs outperform others, match Transformers with better generalization & linear cost!
🤝 With N. Kemper, @leon_het , @j_m_sommer , @guennemann
Leon Hetzel retweeted
Mixed Models with Multiple Instance Learning (MixMIL) received an Oral & Outstanding Student Paper award at @aistats_conf last week! 🏆
MixMIL enables accurate & interpretable patient label prediction from single-cell data by adding attention to GLMMs.#singlecell #MachineLearning
Leon Hetzel retweeted
Get to know #mcml junior member @leon_het 💡
He developed an algorithm called chemCPA designed to make drug discovery more effective. Read more (in German): mcml.ai/news/2024-03-26-mcml…
This article was written by @leonie__fischer from @DJSde!
Leon Hetzel retweeted
Thrilled to present our paper "(Provable) Adversarial Robustness for Group Equivariant Tasks" at #NeurIPS2023!
Joint work with great collaborators @YanScholten @guennemann!
Paper: arxiv.org/abs/2312.02708
Poster #800 Thursday 11 am - 13 pm #NeurIPS
Leon Hetzel retweeted
Is binarization of scATAC-seq data really necessary? The conclusion from our analysis is that a quantitative treatment is in fact beneficial. Now out in Nature Methods! @gagneurlab @fabian_theis nature.com/articles/s41592-0…
Many additions since the preprint 👇(1/n)
Leon Hetzel retweeted
Do you care about uncertainty quantification? Do you like guarantees? Check out our #ICML2023 paper where we bring conformal prediction to Graph Neural Networks.
tldr: Instead of a single label return a *set* that is guaranteed to contain the true label. Set size = uncertainty.
Prediction sets for node classification with a guarantee of covering the true label? Also, without any assumption on the data distribution and the model? Check our last paper at #ICML2023 #ICML23 on "Conformal Prediction Sets for Graph Neural Networks"
openreview.net/forum?id=zGf8…
Leon Hetzel retweeted
If you are interested in ML potentials and/or uncertainty estimation come and visit our presentation of "Uncertainty Estimation for Molecules: Desiderata and Methods" this week at #ICML! Tue, 11am, #415
Joint work with @n_gao96 @Bertrand_Charp @amine_ketata @guennemann
1/2
Leon Hetzel retweeted
1/9 CPAis finally published. It can predict single-cell responses to combinatorial perturbation (drugs, CRISPR). This is a joint collab between @meta and @fabian_theis @HelmholtzMunich. Read the thread to understand the LEGO analogy! embopress.org/doi/full/10.15…
Leon Hetzel retweeted
Happy to announce our new paper on Deterministic Uncertainty Methods @TMLunLimited #ICLR2023 !
We dissect how the design of training schemes, architecture, and prior can significantly impact feature collapse and uncertainty performance!
w/ C. Zhang and @guennemann
Great talk Bastian, thanks for uploading!
📺New video: Curvature for Graph Learning📺
Presenting, among other things, current work with (i) @JoshSouthern13, @jeremy_wayland, @mmbronstein and (ii) @CorinnaCoupette and Sebastian Dalleiger.
Very excited about this research direction!
youtube.com/watch?v=-V0JpdAF…
Leon Hetzel retweeted
📺New video: Curvature for Graph Learning📺
Presenting, among other things, current work with (i) @JoshSouthern13, @jeremy_wayland, @mmbronstein and (ii) @CorinnaCoupette and Sebastian Dalleiger.
Very excited about this research direction!
youtube.com/watch?v=-V0JpdAF…
Leon Hetzel retweeted
A new method from @johwirth @celia4science @Meier_Lab enables cost effective spatial transcriptomics on multiple tissues in parallel. @PioneerCampus
Leon Hetzel retweeted
There are some collaborations that are just fun and this was one of them! Big thank you to @ab_meier and Alessandra Moretti and everyone else involved!🫀
Epicardioid single-cell genomics uncovers principles of human epicardium biology in heart development and disease go.nature.com/3zr2PkH
































