
Global Head @Sanofi: Computational & AI Strategy, AI/ML, Data Science, Bioinformatics & Drug Discovery. Ex @AstraZeneca @MayoClinic @Philips @mountsinainyc
New York, NY
Joined October 2008
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Surprised and humbled to be on this list: "Top 100 AI Leaders in Drug Discovery and Advanced Healthcare"
ai-leaders-healthcare.dka.gl…
#datascience #MachineLearning #HealthTech #Bioinformatics #DrugDiscovery #pharma #biotech #PrecisionMedicine #healthIT
Shameer Khader, PhD, MPH retweeted
Design foresight and model humility for omics inference dlvr.it/TVwGMS
Identifying genetic variants causal for multiple long-term conditions: informing opportunities... - goo.gl/scholar/VFnYmP #ScholarAlerts
Ethical Leadership and Artificial Intelligence in Mental Healthcare: Narrative Review and Case... - goo.gl/scholar/ysmGc9 #ScholarAlerts
Transforming Drug Delivery Systems Through Artificial Intelligence and Machine Learning - goo.gl/scholar/ByZQ2h #ScholarAlerts
Clinical Uses of Common Genetic Variants Associated with Common Diseases - goo.gl/scholar/qc8ksF #ScholarAlerts
Shameer Khader, PhD, MPH retweeted
Refining therapeutic targeting of interleukin-6 by signalling mode selectivity
nature.com/articles/s41573-0…
rdcu.be/4VH5Q2Uzx71a
This new Review discusses how understanding of signalling mechanisms of the cytokine IL-6 could guide the discovery of safer and more effective drugs
Shameer Khader, PhD, MPH retweeted
There's been steady progress using organs in a dish—organoids— for medical research. But now there's the immunoid to enhance our understanding of the complex immune system in people, and at the individual level. @CellStemCell .
sciencedirect.com/science/ar…
Shameer Khader, PhD, MPH retweeted
Almost every paper on polygenic risk scores now reminds us that PRS should be adapted to ancestry. A new @NatureGenet study suggests another important dimension. Age.
The authors studied BMI in 62,276 children across 11 age points from 6 weeks to 8 years. They identified 624 independent signals in the longitudinal analysis. Almost one third did not show the same effect in adults! For 165 signals the association disappeared and for 29 the effect reversed direction.
A striking example is PCSK1. One variant increased BMI at around 8 months but was associated with lower BMI in adults. This fits its biology well because PCSK1 processes multiple hormones and neuropeptides and its role changes across development.
The same pattern was seen with polygenic scores. At 8 to 12 months an age-matched genome-wide PGS explained 10.9% of BMI variance. A PGS trained on adult BMI explained only 1.3%. More than an eightfold difference.
The underlying biology was familiar. The leptin melanocortin pathway was strongly enriched but different genes had different temporal profiles. LEPR and PCSK1 were more important early in life while MC4R POMC and BDNF showed more persistent effects.
Signals were also found near GLP1R and GIPR. Some GLP1R variants acted mainly in early childhood. This is especially interesting because GLP1R is the receptor targeted by semaglutide in Ozempic.
Similar results were seen for rare variants in nearly 480,000 genomes. The authors also found parent-of-origin effects. For example KLF14 acted mainly when the allele was inherited from the mother which fits its known imprinting.
To me, this makes it clear that PRS may need to be adapted not only to ancestry but also to age. The difference can be dramatic. In infancy the right age-specific score explained more BMI variation than score trained in adults. The genome stays the same. Its effects do not.
nature.com/articles/s41588-0…
#GWAS #PRS #adiposity #BMI #snRNA
AlphaFold is being upgraded to better represent some of the least known and deadliest species: viruses
go.nature.com/4dZcYK7
Shameer Khader, PhD, MPH retweeted
We're missing out on the value of genomics in medical practice. The cost (not charge) to do a polygenic risk score for all these diseases (Figure) and more is only $20 and they are informative for high-risk (top 5%) across ancestries
A new review @NEJM
nejm.org/doi/full/10.1056/NE…
Could regulatory T cells (Tregs) shift disease treatment from broad immunosuppression to precision tolerance?
Register ➡️ fro.ntiers.in/36UInIlR23b
#FrontiersIn #Immunology
Shameer Khader, PhD, MPH retweeted
An analysis of FDA-approved drugs reveals uneven timing and concentration of revenue life cycles across modalities and therapeutic areas, offering evidence to guide innovation strategy and policy design in a post-Inflation Reduction Act world nature.com/articles/s41587-0…
rdcu.be/uimZBPj6Pr3a
A Multi-Agent Clinical Decision Support System with Patient Similarity Retrieval on MIMIC-IV - goo.gl/scholar/cjDuf3 #ScholarAlerts #GenAi
Role of Health Digital Twins in Oncology Drug Development-A Primer - goo.gl/scholar/9F1qxs #ScholarAlerts
Shameer Khader, PhD, MPH retweeted
Ensuring multiomics data reproducibility for artificial intelligence with reference materials as a common calibrator nature.com/articles/s41587-0…
Shameer Khader, PhD, MPH retweeted
AI-enhanced adaptive virtual screening of large libraries for ligand discovery nature.com/articles/s41587-0…
Shameer Khader, PhD, MPH retweeted
A survey of biological foundation models reveals current trends and provides an outlook for future developments in this rapidly evolving field go.nature.com/4cLK7sE
rdcu.be/fBPN9
Context-aware ontology-guided healthcare learning model for performance and interpretability - Asthma disease as a case study goo.gl/scholar/GBfxHr #ScholarAlerts
Integrative Analysis of Intestinal Transcriptomes Underscores C2 Upregulation in IBD, AIG, EoE and CRC - goo.gl/scholar/mzxBbr #ScholarAlerts
Generative AI-augmented transcriptomic and microbiome analysis across inflammatory and fibrotic disease states in Crohn's disease - goo.gl/scholar/SPkAqb #ScholarAlerts
















