Presenting our Barley Pan-Genome Data Portal panbarlex.ipk-gatersleben.de at PAG 32 in San Diego. Also hear my talk about it on Wednesday, 11:30am in Town and County D!

That was a great #BrAPI Hackathon 2024 week in Lutherstadt Wittenberg, Germany together with @basti_beier @BazRaubach @cyril_pommier @Stephan__Weise @UweScholz271 a.o. to work on @breedingapi. Thanks @denbiOffice for support. Special thanks to Uwe and Sebastian for organization.

Thanks for a great first conference day!

The intergrated gene catalogue allows for searching genes by their physical positions, IDs or descriptions.

Data analysis and export can be performed on genetic features (genes, exons, ...), custom genomic windows or for sets of specific variants defined by their physical positions.

The genotype axis (y-axis) and variants axis (x-axis) can be zoomed together or indepently from each other.

Minor allele frequencies and heterozygosity frequencies are calculated interactively based on the selected genotypes.

Variants can be filtered by different criteria, e.g. by interactively calculated metrics like MAF or by metadata stored in the VCF files.

It can handle VCF files of every size, even up to hundreds of millions of variants and provides three distinct entry points (A): by providing physical positions, by searching IDs or descriptions of a gene annotation or by performing a BLAST search with a sequence snippet.

We are happy to present our new web tool DivBrowse published at @GigaScience . It’s a software for interactive visualization and explorative data analysis of variant call matrices stored as VCF files. Original paper: doi.org/10.1093/gigascience/…

Today @basti_beier gave a talk about FONDUE results at the AGENT Thinkaton @ WUR @pbr_wur @ELIXIREurope

13 Jahre schon wieder auf Twitter. 😱 Mensch, wie die Zeit vergeht! #MeinTwitterJubiläum

"isa4j: a scalable Java library for creating ISA-Tab metadata" Programmatic creation of ISA-Tab metadata on Java/JVM platforms is now possible. Our preprint is available now: f1000research.com/articles/9… @IPKGatersleben @langemger @UweScholz271 @AstridJunker