JASPAR is an #openaccess database of manually curated, non-redundant transcription factor (TF) binding profiles
Joined October 2017
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Now you can query and access TF binding motifs from various releases of JASPAR database using BioPython without a MySQL connection.
> pip install pyjaspar
> conda install pyjaspar -c bioconda
💻code: github.com/asntech/pyjaspar
📘docs: pyjaspar.rtfd.io/ cc @khanaziz84
JASPAR database retweeted
We are excited to announce the new JASPAR 2024 tracks for hg19, hg38, mm10, and mm39 which represent genome-wide predicted binding sites for transcription factors with binding profiles in the JASPAR CORE collection (@jaspar_db).
Learn more at bit.ly/JASPAR2024
JASPAR database retweeted
I am very excited to see the outcome of the extensive work provided by @elixirnorway Oslo to support JASPAR @jaspar_db in its deployment, maintenance, and monitoring, during the ELIXIR All Hands meeting.
Great work Jeanne Chèneby, @sveinugu, Morten Johansen, and Eivind Hovig.
JASPAR database retweeted
🎉 Excited to announce the 10th release & 20th-anniversary update of JASPAR @jaspar_db , a leading resource in computational regulatory genomics!
Important to note that JASPAR has a new URL: jaspar.elixir.no/
The manuscript can be found at academic.oup.com/nar/advance….
1/9
JASPAR database retweeted
It is always a great feeling to get a paper accepted on a Friday evening 🎉
JASPAR 2024 will soon be up and running for everyone; wait for it😅
JASPAR database retweeted
News article on our most recent publication 👇. Thanks @NCMMnews, and of course @tanja_belova for the great work ✨
med.uio.no/ncmm/english/news…
JASPAR database retweeted
#JobVacancy ELIXIR Norway, location @II_UiB, is hiring System #developers and System #administrators to work on our exciting #Bioinformatics #infrastructure.
jobbnorge.no/en/available-jo…
jobbnorge.no/en/available-jo…
ALT elixir-no logo, job vacancies: System Developer & System Administrator Apply now: elixir.no/dev-bgo person '+' sign
JASPAR database retweeted
Come join us! Two postdoc positions in regulatory genomics-computational and a (mostly) experimental-available in our group to work on Metazoan promoters, enhancers, and their interaction.
Computational: nature.com/naturecareers/job…
Experimental:
nature.com/naturecareers/job…
Please RT.
JASPAR database retweeted
Great day with this amazing group of people! It was such an enjoyable full day of JASPAR @jaspar_db hackathon in sunny Oslo. Really lovely to change the scenery for pushing the next JASPAR release and get together. I'm so lucky to work with such fantastic people!!!
JASPAR database retweeted
Awesome work! Congrats @romain_bm @Francois_Parcy et al. Very valuable for the community; and for the JASPAR @jaspar_db classification 😁😉
JASPAR database retweeted
After 18 years, the original JASPAR_DB paper has reached 2000 citations. Glad it has been useful.
doi.org/10.1093/nar/gkh012
The all-star team:
@[email protected] Wynand Alkema par_engstrom BorisLenhard
JASPAR database retweeted
The problem seems to be fixed. JASPAR is back up and running! @jaspar_db #JASPAR
We've some glitches on our production web-server. Please use the development instance until further notice - jaspar.uio.no/
We apologize for the inconvenience.
You can always query the motifs using the python package github.com/asntech/pyjaspar or R package github.com/da-bar/JASPAR2022
JASPAR database retweeted
We are happy to announce the release of JASPAR Transcription Factor Binding Sites for hg19, hg38, mm10, and mm39. This release corresponds to JASPAR CORE 2022. Learn more about this release at genome.ucsc.edu/goldenPath/n…
@jaspar_db @AMathelier
JASPAR database retweeted
The @NAR_Open Database Issue 2022 is online with 87 new databases and 85 updates, including @jaspar_db academic.oup.com/nar/issue/5…
Here is the complete list of new databases with URLs - academic.oup.com/view-large/…
JASPAR database retweeted
Happy to share that we have added eight excellent Norwegian bioinformatics services to our service delivery plan with @ELIXIREurope! Read more here👇
elixir.no/news/74/63/Eight-n…
JASPAR database retweeted
Great to share our new manuscript describing the latest update of JASPAR @jaspar_db.
New TF binding profiles, familial binding profiles, structural classification of plant DBDs, genome tracks, TFBS enrichment tool, and a new Python package, pyJASPAR.
academic.oup.com/nar/advance…
JASPAR database retweeted
Excited that JASPAR 2022 is out today! It's a significant update, with new TF binding profiles, new enrichment analysis tools and new word cloud profiles. Have at it everyone. #JASPAR2022
bit.ly/3o5dU6k
Great @jaspar_db team effort catalyzed by @AMathelier
JASPAR database retweeted
Native @jaspar_db transcription factor tracks are now available for hg19 and hg38. JASPAR has long been a popular public hub, and that hub will continue to be accessible and offers annotations on additional assemblies.
See our news for more: bit.ly/UCSCjaspar
JASPAR database retweeted
Now you can query and access TF binding motifs from various releases of JASPAR database using BioPython without a MySQL connection.
> pip install pyjaspar
> conda install pyjaspar -c bioconda
💻code: github.com/asntech/pyjaspar
📘docs: pyjaspar.rtfd.io/ cc @khanaziz84