The Farm Animal Genotype-Tissue Expression (FarmGTEx) Consortium amis to provide a atlas of tissue-specific gene expression and regulation in livestock species.
Joined March 2021
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The PigGTEx resource is out now (piggtex.farmgtex.org/). Congratulations to @LingzhaoF @QGG_AU and the global team. Here is the BioRxiv version: biorxiv.org/content/10.1101/…. Hope you enjoy it. Please help spread it widely. Thanks!
FarmGTEx retweeted
The🐷GTEx is here. Regulatory variants (eQTLs, sQTLs and more) across 34 tissues in pigs and lots of follow-on analyses. Great work from the FarmGTEx consortium led by @LingzhaoF.
A compendium of genetic regulatory effects across pig tissues biorxiv.org/cgi/content/shor… #bioRxiv
FarmGTEx retweeted
If you like this one you might also like the earlier work on the 🐄GTEx published earlier this year nature.com/articles/s41588-0…
FarmGTEx retweeted
A compendium of genetic regulatory effects across pig tissues biorxiv.org/cgi/content/shor… #biorxiv_genomic
FarmGTEx retweeted
A compendium of genetic regulatory effects across pig tissues biorxiv.org/cgi/content/shor… #bioRxiv
FarmGTEx retweeted
I am so thrilled to share our PigGTEx resource, as part of the FarmGTEx project. Here we provide the first comprehensive atlas of regulatory variants (e.g., eQTL) across 34 tissues in pigs, and show its importance in studying complex trait genetics and human biomedicine.
A compendium of genetic regulatory effects across pig tissues biorxiv.org/cgi/content/shor… #bioRxiv
FarmGTEx retweeted
How cool is that, the CattleGTEx paper has made the Nature Genetics cover😎. Current issue contains both, research briefing on paper and FarmGTEx 🧑🌾🧬🐄🐷🐔more broadly (nature.com/articles/s41588-0…) and the paper itself (nature.com/articles/s41588-0…)
It is soooo cool to see that the CattleGTEx made @NatureGenet Cover! Welcome to join the next phase of CattleGTEx. Please contact info@farmgtex.org for more details. The FarmGTEx website (farmgtex.org/) will be online soon.
‼️ The September issue of @NatureGenet is out!🤩
Featuring:
✅ A method to map sQTLs
✅ Autism genetics
✅ Physical activity GWAS🏃🏾♀️
✅ Genetic risk of Crohn's disease
✅ Genomics of paediatric ALL
✅ Somatic variation in hiPSCs
AND MUCH MORE‼️
go.nature.com/3QQa4cw
FarmGTEx retweeted
Yao, Liu, @CharleyASummer, Gao, Pan, Liu, @LingzhaoF, @AlbertTenesa & co compare the transcriptomes of human and cattle from 20 tissues. Much about expression, including eQTLs, are conserved between the species. Heritability is higher for conserved genes genomebiology.biomedcentral.…
ALT t-SNE plot of samples. On left, colored by species, and on right, colored by tissue, showing that the same tissue from the two species clusters together
FarmGTEx retweeted
A multi-tissue atlas of regulatory variants in cattle. #CattleRegulatoryVariants #TissueVariantAtlas #CattleGTEx @GroupTenesa @LingzhaoF @NatureGenet
nature.com/articles/s41588-0…
FarmGTEx retweeted
Congratulations @LingzhaoF and the whole team! 🐄
‼️ ONLINE NOW @NatureGenet
📰 A multi-tissue atlas of regulatory variants in cattle
🧑🏾🤝🧑🏼 George E. Liu @AlbertTenesa Lingzhao Fang and team
⬇️🐄⬇️
go.nature.com/3vTfLyn
FarmGTEx retweeted
This is a great moment for the FarmGTEx project. Our pilot CattleGTEx work is online in @NatureGenet now. The new phase of CattleGTEx is starting now. Please contact if you are interested in. Together we build a comphensive FarmGTEx atlas!
‼️ ONLINE NOW @NatureGenet
📰 A multi-tissue atlas of regulatory variants in cattle
🧑🏾🤝🧑🏼 George E. Liu @AlbertTenesa Lingzhao Fang and team
⬇️🐄⬇️
go.nature.com/3vTfLyn
FarmGTEx retweeted
‼️ ONLINE NOW @NatureGenet
📰 A multi-tissue atlas of regulatory variants in cattle
🧑🏾🤝🧑🏼 George E. Liu @AlbertTenesa Lingzhao Fang and team
⬇️🐄⬇️
go.nature.com/3vTfLyn
FarmGTEx retweeted
"For many decades claims have been made that quantitative genetics was dead or dying but, condescendingly, perhaps still useful until the contents of the black box were revealed, a feat which would be ‘just round the corner’. " - William G. Hill nature.com/articles/s41588-0…
FarmGTEx retweeted
We've made a draft human pangenome! 47 haplotype-resolved assemblies, two reference genomes, and five pangenome graphs!
ALT Structural haplotypes of HLA-A in the PGGB HPRCy1 graph
FarmGTEx retweeted
A beginner’s guide to assembling a draft genome and analyzing structural variants with long-read sequencing technologies sciencedirect.com/science/ar…
FarmGTEx retweeted
Legend Theo Meuwissen presents an elegant analysis to show including causal variants improves genomic prediction accuracy @wcgalp2022 #WCGALP2022
