@evaristplanet
 Vaud, Switzerland
Joined February 2011
  • Tweets1.1K
  • Following93
  • Followers43
Interesting study on second-gen cell-type deconvolution from @Francesca_Fin_ It benchmarks tools using diverse data, showing their strengths and limitations. Check out omnideconv for better deconvolution methods #bioinformatics #rnaseq #deconvolution biorxiv.org/content/10.1101/…

Benchmarking second-generation methods for cell-type deconvolution of transcriptomic data

In silico cell-type deconvolution from bulk transcriptomics data is a powerful technique to gain insights into the cellular composition of complex tissues. While first-generation methods used...

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We'll be at @FutureLabs_Live on June 26-27 Pass by booth #S228 to learn how we can boost your AI ! #AI #machinelearning #datascience #genomics #cancer
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🚀 New blog post! Discover how scRNA-seq and spatial transcriptomics are shaping biology and precision medicine with tools like predicTCR from @Platten_lab and integrative single cell methods from @LongCai_Lab nexco.ch/blog/How-Cutting-Ed…

How Cutting-Edge Bioinformatics Drive Advances in Life Sciences and Medicine

Through bioinformatics, where data processing and analysis techniques are in continuous evolution as the experimental methods to explore the -omics advance, groundbreaking innovations continue to...

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Alphafold3 is here and we tested it! Dive into our latest blog post to discover how it enables molecular docking and explore its implications for drug design and the journey toward treatments. #AlphaFold @GoogleDeepMind nexco.ch/blog/AlphaFold-3-Ad…

AlphaFold 3 Advances the Future AI Technologies for Pharma and Biotech

You know at Nexco we are always on the lookout for groundbreaking innovations in bioinformatics, in order to keep you informed and ourselves updated with the latest technologies that can help you in...

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Nexco's latest blog: Exploring long-read sequencing to unveil the genome's hidden layers and its future impact
Nexco Analytics@nexcoanalytics28 Mar 2024
Long-read sequencing has enabled us to explore the repetitive parts of genomes, often called the dark genome, revealing its regulatory roles. Discover these techniques, by @nanopore or @PacBio and why they were named Nature Methods of the Year in 2022! nexco.ch/blog/The-Power-and-…

The Power and Promise of Long-Read Sequencing Technologies

Long-read sequencing has transformed genomics, transcriptomics, and epigenomics by illuminating the dark side of the genome previously missed with short-read sequencing approaches. Highly repetitive...

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Here we are at another AMLD Great talks ahead. Looking forwards to get started ! #AMLDEPFL2024
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AI understanding genomics with #Evo: The new foundation model developed by @BrianHie. 🧬 Evo's architecture enhances our understanding in gene function and synthetic biology. Discover more in our latest blog post. #Genomics #MachineLearning #BiologyResearch
Nexco Analytics@nexcoanalytics20 Mar 2024
If you've ever wondered about the potential outcomes of training an AI to understand the central dogma of biology, take a look at our latest blog post and meet Evo - an AI modeling DNA, RNA and protein nexco.ch/blog/AI-models-begi…

AI models begin to capture the whole central dogma of molecular biology

In a groundbreaking effort to what we can summarize as “have a computer understand the entirety of the central dogma of molecular biology and everything that arises from it”, a complex group of...

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For all TE enthusiasts: Dive into our latest post on TEs in #CancerResearch from @nexcoanalytics
Nexco Analytics@nexcoanalytics5 Mar 2024
Long considered 'junk DNA', the repetitive genome's role in #cancer is now being unveiled thanks to the advent of next-generation sequencing #NGS! Discover more about transposable elements and the 'dark side' of our genome in our latest blog: nexco.ch/blog/Transposable-E…

Transposable Elements in Cancer

Welcome to the dark side of the genome ─ transposable elements. These repetitive sequences comprise around half of the human genome (1), and their intricate control contributes to countless aspects...

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Today in our blog we cover STACAS: a new semi-supervised method for #scRNAseq integration from @carmonation lab. Built on Seurat's anchor method, it allows batch correction and integration of datasets from multiple sources. nexco.ch/blog/New-tool-for-s…

New tool for simple and powerful integration of single-cell RNA data from heterogeneous sources

The integration of single-cell transcriptomics data coming from different experiments and individuals is at the core of data analysis, but critical and challenging due to the presence of technical...

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@nexcoanalytics moved from @EPFL to @BiopoleLausanne today Being #Bioinformatics / #Genomics / #DataScience specialists in life sciences, with most customers in the lemanic region, we’re looking forward to increase our collaborations within the Biopole community
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evaristplanet retweeted
Ioannis Xenarios@ixenario30 Jan 2024
Opening position in bioinformatics @UNIGE jobs.unige.ch/www/wd_portal.… level associate/full professor. A very interesting environment both in disease area (diabetes/oncology) and in viral and epidemiological arena.
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That's the opening article of a series followed by this other one where I prompt an LLM to call external libraries to exploit their calculation and plotting capabilities: medium.com/towards-data-scie…

Powerful Data Analysis and Plotting via Natural Language Requests by Giving LLMs Access to…

Getting LLMs to analyze and plot data for you, right in your web browser

medium.com
Towards Data Science
@TDataScience28 Jan 2024
How well can LLMs support our data-analysis workflows? @labriataphd sets out to find out, using natural language prompts to generate code for exploring a dataset. buff.ly/3O81yXP
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Glad to (after lots of effort) announce our ONex tool for Genomics data analysis. We already use it internally and we love it!
Nexco Analytics@nexcoanalytics24 Jan 2024
Discover our new sequencing data analysis tool. Transform your data into insights with our comprehensive platform—from raw data to interactive results. Explore more: nexco.ch/blog/Discover-ONex-… nexco.ch/onex #DataScience #Bioinformatics #Genomics

Discover ONex: our end-to-end solution for Omics analysis

As Next Generation Sequencing (NGS) technologies have advanced, we’ve seen a dramatic reduction in costs and a corresponding surge in data volume. What once cost millions of dollars to sequence a...

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Current biotechnology is dependent on enzymes, so knowing how to tune their properties is an art worth mastering. See how huge optimization of an enzyme’s thermal stability lowers costs for oil degumming and reduces waste production in our latest blog: nexco.ch/blog/Success-storie…

Success stories optimizing enzyme stability through expert analysis

Proteins, the molecular workhorses of life, have found extensive applications across industries due to their remarkable catalytic and recognition capabilities. However, the gap between the natural...

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I am excited to share our latest contribution to the RNA velocity field, which encapsulates a dedicated effort by my graduate student @alexlederer19 to improve its statistical foundations and focus on its inferential value to ask scientific questions. 1/10 biorxiv.org/cgi/content/shor…
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Exploring the depths of cell-cell interactions with recent advances in #Transcriptomics. New tools and algorithms help understand of how cells communicate and interact, clarifying complex biological processes. nature.com/articles/s41576-0… Thanks @Nathan_E_Lewis @hmbaghdassarian @eagut

The diversification of methods for studying cell–cell interactions and communication

Nature Reviews Genetics - In this Review, the authors summarize recent progress in cell–cell interaction (CCI) research. They describe the recent evolution in computational tools that...

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🧠 Unveiling the Mouse Brain Atlas! Discover how researchers used single-cell & spatial transcriptomics to map 5,322 cell types in the brain. Dive into our latest blog for insights on this monumental effort in neuroscience. #spatialtranscriptomics nexco.ch/blog/Integrating-Si…

Integrating Single-Cell and Spatial Transcriptomics: An Exciting New Era

In a huge collaborative effort, researchers from the BRAIN Initiative Cell Census Network (BICCN) have combined single-cell and spatial transcriptomics to catalog the type and location of cells...

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🔍 In our latest blog post, uncover how large language models #LLMs are extracting valuable insights from scientific texts, predicting gene functions, and helping in #Bioinformatics nexco.ch/blog/Large-Language…

Large Language Models like ChatGPT Begin to Permeate Bioinformatics

The gradual integration of Large Language Models (LLMs) like ChatGPT into biology is starting to happen, opening up new ways to do text mining, ontology, and bioinformatics. Given the potential of...

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🔬 Dive into the world of spatial transcriptomics with our latest blog post! Explore essential strategies and tips for effective data analysis in this fascinating field. 🧬💻 Read now: nexco.ch/blog/Spatial-Transc…

Spatial Transcriptomic Data Analysis: A Beginner’s Guide

Analyzing high-dimensional spatial transcriptomic data appropriately and efficiently is an absolute must for any spatial transcriptomic experiment to produce accurate, robust, and biologically...

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Revolutionize your #Proteomics research with #Spectroscape! Inspired by Facebook's tech, it offers real-time data analysis, error correction, and groundbreaking discoveries. Check out our blog for how Spectroscape can transform your data to insights! nexco.ch/blog/Building-on-an…

Building on an Algorithm from Facebook, Spectroscape Speeds Up Data Analysis in Proteomics

Proteomics, the science of studying proteins and their regulation, modifications and functions, generates huge amounts of data. Therefore, software tools for efficient data management, browsing and...

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