Chileno 🇨🇱 - @MSCActions Postdoctoral Fellow at @sangerinstitute https://xitter.cf/t.co/K6ybFal1pG - PhD in Bioinformatics from @UCSanDiego @LewisLabUCSD
Joined July 2007
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Erick Armingol retweeted
Check out our latest work on inferring metabolite-protein-mediated cell-cell communication. Led by @eagut doi.org/10.1093/bioinformati…
I’ll be talking at the #ISMBECCB2025 about scCellFie and how we can use single-cell and spatial transcriptomics to study metabolism. If you are interested, join the #SysMod COSI on Tue 22th at 5pm (room 01C) 🙌
Erick Armingol retweeted
3/ If you'd like to work on the vibrant, collaborative and world-class Cambridge Biomedical Campus @CamBioCampus, apply here: jobs.cam.ac.uk/job/51721/
Read more about our research topics here: cruk.cam.ac.uk/research-grou…
Erick Armingol retweeted
I'm honoured to join @CRUK_CI and @Cambridge_Uni as a Junior Group Leader of AI for Cancer. My group will focus on reasoning, multimodality, hypothesis-making, and more to decode disease and health.
A few positions are opened — consider applying to outsmart cancer together!
We are delighted to welcome @hana_aliee to the Institute. She joins as a Junior Group Leader and will lead her team in developing AI models to understand the molecular mechanisms driving health and disease. Find out more: cruk.cam.ac.uk/news/dr-hana-…
I’m happy to share that our scCellFie manuscript is finally on bioRxiv — a project that was an amazing opportunity to return to my roots in metabolism!
We infer metabolic activity from single-cell & spatial transcriptomics 🧬
Read the pre-print here👇
📄 doi.org/10.1101/2025.05.09.6…
🧱 In endometrial carcinoma, scCellFie revealed:
• Spatially organized metabolic activities
• Tumor-associated estrogen & kynurenine signaling
• Metabolic tasks linked to tumorigenesis potential
#CancerResearch #SpatialTranscriptomics #SpatialBiology
🔗 Find out more
📄Preprint: doi.org/10.1101/2025.05.09.6…
💻GitHub: github.com/earmingol/scCellF…
📚Tutorials: sccellfie.readthedocs.io/
🤝 Thanks to the Vento Lab and all collaborators!
We hope scCellFie supports your exploration of metabolism in health & disease 🧪
#Metabolism
Erick Armingol retweeted
(1/n) The first preprint from our lab is now out in @NatureGenet! We tried to tackle a key challenge in spatial biology to quantitatively characterizing cellular niches by learning spatial gene programs using NicheCompas led by @SebastianBirk_.
Paper: shorturl.at/b4Hjk
It’s great to finally see this published, and now with experimental validations! Congrats @cameronmartino and the team. Happy to be part of the long list of co-authors 😆
🔥 Finally published in @mbiojournal! An update from the 2020 pre-print: “SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx.” 🔗journals.asm.org/doi/10.1128… 🧵👇
Erick Armingol retweeted
Methods for studying cell–cell interactions and communication go.nature.com/491i6Zi #Review by @eagut, @hmbaghdassarian & @Nathan_E_Lewis
@LewisLabUCSD @UCSanDiegoCPD
Erick Armingol retweeted
Arrived at the European Conference on Computational Biology in Turku, Finland! 🇫🇮 @eagut
Sarah Teichmann opens on the future of human cell atlases #ECCB2024 #ComputationalBiology @UniTurku @ECCBinfo @sangerinstitute
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A study in @NatureMedicine finds generally larger brain-age gaps in Latin American compared with non-Latin American populations, which were influenced by disparities in socioeconomic and health-related factors. go.nature.com/3MoyLg3
Amazing work led by @HassanMassalha !
Excited to share our new preprint: 'A Developmental Cell Atlas of the Human Thyroid Gland' on biorxiv.org/content/10.1101/…! We uncover the diversity of thyrocytes throughout lifespan, offering insights into #thyroid development in health & disease… 👇
As a big fan of tensor factorization, I’d like to share these two preprints from @aarmey ‘s group! Useful methods in single cell 🎉
biorxiv.org/content/10.1101/…
