Reproducible science, neuroinformatics and scientific Python.
New Hampshire, USA
Joined September 2016
- Tweets2.7K
- Following172
- Followers704
- Likes773
Pretty much been off Twitter for most of a year anyway, but in case I feel the urge, I'll be moving to mas.to/@effigies
On @OpenNeuroOrg, we're implementing a data retention policy intended to ensure that changes to datasets don't get accidentally abandoned. I wrote up how to see what changes are in your draft using @datalad: gist.github.com/effigies/312…
Chris Markiewicz retweeted
After hundreds of #OHBM2022 attendees responded to the COVID poll, I think it makes sense to talk about immediate impact beyond infection now: For how long have you been sick enough that you could/should not work?
13%< a day/not at all
9%less than 4 days
15%more than 4 days
64%just show results
288 votes • Final results Chris Markiewicz retweeted
With #OHBM2022 coming to a close, what impact had COVID? Please share widely! Thx!
13%I tested positive
15%Always tested negative
11%I did not test
61%I did not attend/show res
1,326 votes • Final resultsIf you need to pick up a poster that @AdinaKrik had printed for you, come find them outside the @OhbmOpen Open Science Room! Thanks to @SudoNeuroSci for delivery! #OHBM2022 #OHBM22
Chris Markiewicz retweeted
Here is a new step-by-step guide to help you craft minimal reproducing code examples for efficient bug reporting:
scikit-learn.org/dev/develop…
1. include all import statements
2. drop any unnecessary code constructs
3. use a synthetic dataset
Thanks @ArturoAmorQ for the contrib!
Chris Markiewicz retweeted
1/n It's finally online! You can read all about the PET BIDS extension here: rdcu.be/cH4fD Together with many PET experts we developed the positron emission tomography extension for the Brain Imaging Data Structure (BIDS). @OpenNeuroPET @CopenhagenNeuro @Rigshospitalet
Chris Markiewicz retweeted
As with all publicly funded projects it is necessary+useful to assess their relevance for continued funding. We at @datalad would be grateful to learn how you rely on the software. Anything is interesting+helpful, maybe as simple as the total size or number of files tracked. Thx!
Chris Markiewicz retweeted
I've put together a little tool that rearranges fmriprep (21.0.0 or later) reports to make them easier to review in bulk: github.com/nimh-comppsych/fm…
We also have some thoughts on QA interpretation here: github.com/nimh-comppsych/fm…
Chris Markiewicz retweeted
We are looking for a security focus back-end IT person to build the future of EU data sharing - 4 years guarantee for now! info here candidate.hr-manager.net/App… #WomenWhoCode #FreshlyGraduated
An old laptop I've been using for testing and long-running jobs has died. Any recommendations for a small off-the-shelf box with reasonable specs? Looking at a Lenovo M75n. lenovo.com/us/en/p/desktops/…
Chris Markiewicz retweeted
Join us as developer in building @OpenNeuroPET, a plaftform for PET data sharing with @CyrilRPernet, @martinnorgaard_ and @GitteKnudsen2 at @CopenhagenNeuro @Rigshospitalet See the call here: nru.dk/index.php/vacancies
Chris Markiewicz retweeted
FAIRly big: A framework for computationally reproducible processing of large-scale data biorxiv.org/content/10.1101/…
Chris Markiewicz retweeted
Hi all! We have an opening for a software engineer at TReNDS, required proficiency in Matlab & Python, this person will lead the next phase of the GIFT/FIT tools and more. Come join us! If interested please email or DM me.
Chris Markiewicz retweeted
Twelve-Year-Old Linux Vulnerability Discovered and Patched schneier.com/blog/archives/2…
Chris Markiewicz retweeted
Since the great @AFNIman has retired, we are looking for someone to take over the keys to the NIH fMRI analysis kingdom. The group is extremely well supported - huge opportunity to make an impact on the future of fMRI/multimodal analysis. Apply here: cmn.nimh.nih.gov/compcore-jo…
Chris Markiewicz retweeted
I'm releasing my book, Modern Cryptanalysis, for free! swenson.io/2022_01_25_modern…
It's been out of print for a while now. I've cleaned it up a slight bit and reformatted it, and put the PDF up on my site.
Enjoy!