Sandeep Kaur (@compbiosan) profile picture

Sandeep Kaur

@compbiosan
Joined January 2019
  • Tweets99
  • Following264
  • Followers59
1Media
Photo by Sandeep Kaur (@compbiosan)
Just published👍I’m glad to share: Genomic evidence of two-staged transmission of the early seventh cholera pandemic | Nature Communications ⁦@LanlabUnsw⁩ #cholera nature.com/articles/s41467-0…
Genomic evidence of two-staged transmission of the early seventh cholera pandemic

Genomic evidence of two-staged transmission of the early seventh cholera pandemic

Nature Communications - The seventh cholera pandemic spread across the globe in three waves from 1961. Here, the authors sequence 22 genomes from 1961 to 1979 and show that the first wave of the...

nature.com
6
9
4,884
Sandeep Kaur retweeted
bioRxiv (@biorxivpreprint) profile picture
bioRxiv@biorxivpreprint10 May 2024
Characterising Staphylococcus aureus genomic epidemiology with Multilevel Genome Typing. biorxiv.org/cgi/content/shor… #bioRxiv
2
1
2,434
Global genomic dissection of antimicrobial resistance in Salmonella Typhimurium biorxiv.org/cgi/content/shor… #biorxiv_micrbio
2
3
1,499
Our lab is hiring two Research Assistants. A Computer Scientist and a Biomedical Scientist. Please help us spread the word and apply before Nov. 29th.
2
32
36
7,651
How big are the cells? Microorganisms in perspective
71
3,696
268
12,897
1,464,522
Sandeep Kaur retweeted
lanlabUNSW (@LanlabUnsw) profile picture
lanlabUNSW@LanlabUnsw3 Aug 2023
New paper from @LanlabUnsw, in @EMI_Journal tandfonline.com/doi/full/10.…. We described the global genomic epidemiology and evolution of B. #pertussis with >6500 isolates using MGT. @mjohnpayne @AliceZhengXu @compbiosan @sophie_octavia Public database -> mgtdb.unsw.edu.au/pertussis/. 1/6
Image from lanlabUNSW (@LanlabUnsw)
1
5
9
591
My last chapter of PhD work in @LanlabUnsw.
Microbiology Spectrum (@JournalSpectrum) profile pictureMicrobiology Spectrum@JournalSpectrum30 Jan 2023
Check out the collaborative work of @lanlabUNSW, Westmead hospital, and Queensland Health about #genomic epidemiology of Australian #Salmonella #Enteritidis using multilevel genome typing #MGT. Topics on #outbreak, #MDR and #plasmid. journals.asm.org/doi/10.1128…
Image from Microbiology Spectrum (@JournalSpectrum)
1
2
7
376
New preprint from @LanlabUNSW! biorxiv.org/content/10.1101/… We describe large and small scale trends in global #Bordetella #pertussis populations using a standardised multilevel genome typing (MGT) nomenclature and public database mgtdb.unsw.edu.au/pertussis/ @LanlabUnsw #microbialgenomics
Image from Michael Payne (@mjohnpayne)
1
5
19
1,074
My latest research on Genomic Epidemiology of Vibrio cholerae O139 is published on Emerging Infectious Diseases journal. Thank you ⁦@LanlabUnsw⁩ ⁦@mjohnpayne⁩ ⁦@DazhiJin⁩ ⁦@UNSWBABS⁩ #cholera is my favorite forever 😄 wwwnc.cdc.gov/eid/article/28…
1
6
1
13
Meeting (almost) all our brilliant @AusPathoGen Program partners today for our All Partners Symposium in sunny Sydney!
Image from Angela Donald (@Angelafdonald)
5
21
ShigEiFinder version 1.3 released! Includes fixes and updates that resolve issues raised in this excellent recent paper by @iman__yassine and @weill_xavier nature.com/articles/s41467-0…. Accuracy now over 92% in routine surveillance! @LanlabUnsw #Shigella #EIEC. github.com/LanLab/ShigEiFind…
5
8
Replying to @TrumanLab
Pretty much all of them do (self paper plug bit.ly/3uKHuRU)
Image from Joel Steele 🧪💉⚡💥📹 (@JoelisSteele)
3
6
1
48
Sandeep Kaur retweeted
VIZBI (@vizbi) profile picture
VIZBI@vizbi16 Mar 2022
first talk in #vizbi2022 #rna session from @athmapai - explaining mrna splicing and fidelity
Image from VIZBI (@vizbi)
1
4
Sandeep Kaur retweeted
Eric Topol (@EricTopol) profile picture
Eric Topol
@EricTopol3 Mar 2022
—Hey #AI, I'd like to design a way to accurately diagnose >1,900 viral species in <2 hours —OK, here you go nature.com/articles/s41587-0… @NatureBiotech @PardisSabeti @haydenmetsky @broadinstitute
Designing sensitive viral diagnostics with machine learning

Designing sensitive viral diagnostics with machine learning

Nature Biotechnology - Viral diagnostics with maximum sensitivity are designed using machine learning and combinatorial optimization.

nature.com
1
29
100
Sandeep Kaur retweeted
Laurence Luu (@LaurenceLuu) profile picture
Laurence Luu@LaurenceLuu9 Jan 2022
New Australian #bordetella #pertussis #genomics preprint alert! @LanlabUnsw @AliceZhengXu @sophie_octavia biorxiv.org/content/10.1101/…
Image from Laurence Luu (@LaurenceLuu)
Image from Laurence Luu (@LaurenceLuu)
8
19
Cluster-specific gene markers enhance Shigella and enteroinvasive Escherichia coli in silico serotyping, from @zxmXiaomei @mjohnpayne @LanlabUnsw and colleagues in #MGen doi.org/10.1099/mgen.0.00070…
Image from Microbiology Society (@MicrobioSoc)
7
1
13
Interestingly the co-occurrence of Q498R and N501Y (see aquaria.app/SARS-CoV-2/S/7bh…) which probably contributes to better binding between #ACE2 and #SARSCoV2, had been structurally investigated for increasing virulence, before the discovery of #omicron.
Image from Andrea Schafferhans 🦋 (@aSchaFu)
1
4
For rapid access to structural information about the variations in #omicron, we (lab of @seaniod) have created an info graphic: aquaria.app/omicron Many of the variations are present in structures of #SARSCoV2 or #SARSCoV. Click on the number of structures to view them.
Image from Andrea Schafferhans 🦋 (@aSchaFu)
1
2
5
Check our recent paper about genomic characteristics of the emerging foodborne pathogen #Escherichia #albertii from @LanlabUnsw in @micgenomics. About population structure, #virulence genes distribution, the great concern of #MDR. #plasmids #prophages microbiologyresearch.org/con…
Comparative genomics of Chinese and international isolates of Escherichia albertii: population...

Comparative genomics of Chinese and international isolates of Escherichia albertii: population...

microbiologyresearch.org
1
10
16
New from @zxmXiaomei and @LanlabUnsw in @micgenomics! Specific gene marker sets to identify and distinguish Shigella and EIEC clusters and serotypes. microbiologyresearch.org/con…. Applied in ShigEiFinder, an online and command line tool (>99% accurate): github.com/LanLab/ShigEiFind….
Cluster-specific gene markers enhance Shigella and enteroinvasive Escherichia coli in silico...

Cluster-specific gene markers enhance Shigella and enteroinvasive Escherichia coli in silico...

microbiologyresearch.org
8
14
Load more