circular RNA biology Training Network: from biogenesis to biomarkers

Joined November 2016
With @landthaler_m lab, we have a position for a computational postdoc. Apply if you are into #genomics, #rna, #singlecell,#machinelearning and possibly #DeepLearning mdc-berlin.de/career/jobs/po…
BigDataViewer Shareable: Your collaborator can look at your data by a simple code. Sharing includes data loading, current view, colors, brightness, and Transformation youtu.be/x296-YvDKQM
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New release of annotations in @VastDB (v11). With this release we cover all the previous studies experimentally investigating the functions of AS events we were aware of, with a total of 5542 entries (EventID-PubmedID pairs). @CRGenomica
We have released a new batch of functional annotations (v11): 600 entries from previous publications investigating the function of AS events. This makes a total of 3637 entries directly from publications, 397 from CRISPR screens and 1511 from experimentally validated ELMs.
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circRTrain retweeted
We are excited to share our recent work uncovering specialized genome structures in the brain, online today in @Nature: rdcu.be/cBvwz @apombo1 @BIMSB_MDC @MDC_Berlin @helmholtz_de @4DNucleome @NeuroCureBerlin ↓ Short thread below ↓ 1/7
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New release with functional annotations of AS events in our @VastDB! 1059 new entries from peer reviewed publications, for a total of >3000. Details and three examples in this thread. Visit and contribute to VastDB here: vastdb.crg.eu. @CRGenomica @biocores_
We have released a new batch of functional annotations (v10): 1059 entries, our record so far! This makes a total of 3034 entries directly from peer-reviewed publications, 397 from CRISPR screens and 1511 from experimentally validated ELMs. Three examples from v10 👇.@CRGenomica
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🗣️#Virchow2_0 #OPENCALL for cell-based medicine project ideas open until 12 Dec 21 Don't miss your chance to get involved! More info & how to apply➡️virchow2-0.de/index.php/open… Registration for the info event on 8 Nov 21➡️mdc-berlin.zoom.us/webinar/r… #Clusters4Future #Zukunftscluster
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We're looking for BSc/MSc students (Germany/abroad) from bio/med/physics/CS to join our interdisciplinary, research-oriented QTeam on single-cell sequencing data analysis at Humboldt-Universität Berlin! Course description and application: bit.ly/organoids_qteams
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It is finally out!!!
SRCP, a short read circRNA pipeline, from Rabin, @skadener & co. It uses a two-step process: circRNAs are annotated using RNaseR-treated samples, from human, monkey, rat & mouse; then this catalog is used for quantification. circRNAs bound to Ago2 found. genomebiology.biomedcentral.…
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Here is this year's content of our computational #genomics course focusing on #machineLearning. We had an excellent group of participants from over 20 countries.🇺🇸🇩🇪🇨🇭🇪🇸🇬🇧🇬🇷🇹🇷🇿🇦🇨🇦...github.com/BIMSBbioinfo/comp…
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We are delighted to share our 1st tweet: Save the date for our kick-off meeting! Excited about #singlecell #organoids & #AI4health? Join us to develop a successful cluster strategy & create a novel biomedical AI innovation ecosystem for cell-based medicine in Berlin-Brandenburg!
We had the pleasure to work with a number of talented remote interns this year. I wrote about how to organize such remote internships and the lessons learned during this process. #MachineLearning #DataScience towardsdatascience.com/how-t…
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We are looking for talents for next group of PhD students in our (Berlin-Duke) training program in gene regulation. Topics range across genomics and editing, computational biology and machine learning, and developmental biology. Please share! regulatory-genome.hu-berlin.…
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10 days left to apply! If you are looking for a computational postodc in Barcelona, on single-cell transcriptomics, RNA binding proteins & neurodegeneration, consider joining us! More info 👇#singlecell #JobOpportunity #Postdoc #Barcelona
Please RT. We have open a computational postdoc position to join my lab at @p_cmrc @idibell_cat in #Barcelona. The project is about #RBP and #GRNs in #singlecell. Deadline 15th August. More info idibell.cat/es/ofertes-feina…
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Please RT. We have open a computational postdoc position to join my lab at @p_cmrc @idibell_cat in #Barcelona. The project is about #RBP and #GRNs in #singlecell. Deadline 15th August. More info idibell.cat/es/ofertes-feina…
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Interested in studying circRNA-protein interactions? You might have a look on this comprehensive methods summary from my former colleagues from @jlugiessen. 👩🏼‍🔬🧬👨🏻‍🔬 #Biochemistry #circRNA #rnatx2021 doi.org/10.1016/j.ymeth.2021…
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circRTrain retweeted
We are honoured to welcome Nikolaus Rajwesky (@N_Rajewsky) as [BC]2 keynote speaker - Nikolaus will give our #bc2basel closing lecture! Interested in his presentation? Register now & join as at [BC]2: tinyurl.com/f3au3nk #GeneExpression #RNAbiology #Bioinformatics
Please RT. We are hiring!! computational #postdoc in #singlecell transcriptomics in #Barcelona @idibell_cat @p_cmrc Deadline of applications 13th june. More info 👇idibell.cat/es/ofertes-feina…
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