@chi_polydata

Instructional Assistant Professor at @TAMUdental. 3D imaging, modeling, visualization, and simulation. Craniofacial anatomy and evolution.

Joined April 2021
  • Tweets37
  • Following89
  • Followers49
2Media
#Photogrammetry mesh vs #nerf of same dataset (207 photos from my 2012 paper: palaeo-electronica.org/conte…)
14
71
5,414
Having #1000baboons scans hosted at @LoyolaChicago is a challenge.Placing landmarks over all of them is time consuming. But we are testing ALPACA and MALPACA modules from @SlicerMorph in @3DSlicerApp to automate the process! Results soon! @cenieh_icts @erc_research @chi_polydata
Testing ALPACA and MALPACA modules from SlicerMorph in 3D Slicer to automate the process

ALT Testing ALPACA and MALPACA modules from SlicerMorph in 3D Slicer to automate the process

3
37
1,486
Replying to @3DSlicerApp
@3DSlicerApp v5.4 dropped! If you're looking for SegmentGeometry, the module is now part of the new SlicerBiomech extension. More tools and more tutorials coming soon! github.com/jmhuie/SlicerBiom…
Dr. Jonathan Huie@jmhuiee14 Mar 2022
New #OA paper and software in @iobopen!!! Introducing SegmentGeometry - a new module for measuring 2nd moment of area in @3DSlicerApp. In the paper we give a beam theory primer and analyze 2 case studies with 2nd moment. Watch this thread for deets! doi.org/10.1093/iob/obac009 1/9
4
19
1,716
The Biovision Lab @FloridaMuseum is recruiting PhD students for Spring/Fall 2024! If you are interested in working at the intersection of computer science and biology, contact the team to learn more: biovisionlab.com/join-us

BioVision Lab - Join us

Join Us

biovisionlab.com
3
1
7
875
RENCI at UNC Chapel Hill has an opening for a Research Scientist with expertise in integrating knowledge graphs and machine learning, and an interest in neurosymbolic methods. Here's the job posting: unc.peopleadmin.com/postings… Please share!
2
7
3
1,081
An Open-Source Photogrammetry Workflow for Reconstructing 3D Models by @chi_polydata & Maga "...we presented an affordable & highly flexible SFM #photogrammetry pipeline based on the open-source package #OpenDroneMap (ODM) & its user interface #WebODM." doi.org/10.1093/iob/obad024
4
17
1,273
Thanks for the hard work throughout the publication process! @iobjournal
iobjournal@sicb.org@iobjournal18 Jul 2023
in issue! An Open-Source #Photogrammetry Workflow for Reconstructing #3D Models by Zhang, & Maga doi.org/10.1093/iob/obad024 "Acquiring accurate 3D #biological models efficiently and economically is important for #morphological data collection and analysis in #organismal #biology."
1
1
1
645
This one took a long time and a lot of effort from wonderful collaborators. But DeepBryo is finally out. Check our open access paper at: aslopubs.onlinelibrary.wiley…
3
29
3
80
10,291
The SlicerMorph workshop at the #AABA2023 went well with these awesome participants! Thanks @BiologicalAnth for the support! @SlicerMorph @3DSlicerApp
2
15
785
Chi Zhang retweeted
AABA@BiologicalAnth19 Apr 2023
WOOHOO WEDNESDAY WORKSHOPS!! If you didn't register, don't worry! Hop on the virtual platform and watch a livestream of two #AABA2023 workshops at 1 PM today. "SlicerMorph: an open-source toolkit for 3D imaging and morphometric analysis" AND "Introduction to Ancient DNA Analysis"
An image with the words "SlicerMorph: an open-source toolkit for 3D imaging and morphometric analysis 1:00 PM – 5:00 PM Organizers: Chi Zhang (Seattle Children’s Research Institute) and A. Murat Maga (University of Washington & Seattle Children’s Research Institute) Location: Tuscany 9 This workshop is designed to introduce SlicerMorph, offer a 3D digital morphology workflow, and support geometric morphometrics data collection from 3D models."

ALT An image with the words "SlicerMorph: an open-source toolkit for 3D imaging and morphometric analysis 1:00 PM – 5:00 PM Organizers: Chi Zhang (Seattle Children’s Research Institute) and A. Murat Maga (University of Washington & Seattle Children’s Research Institute) Location: Tuscany 9 This workshop is designed to introduce SlicerMorph, offer a 3D digital morphology workflow, and support geometric morphometrics data collection from 3D models."

An image with the words "Introduction to Ancient DNA Analysis 1:00 PM – 5:00 PM Organizers: Elena I. Zavala (University of California, Berkeley and San Francisco State University), Ainash Childebayeva (Max Planck Institute for Evolutionary Anthropology, and University of Kansas), Laurits Skov (University of California, Berkeley) Location: Tuscany 1 This workshop will introduce both the laboratory and bioinformatic steps and considerations for ancient DNA analysis."

ALT An image with the words "Introduction to Ancient DNA Analysis 1:00 PM – 5:00 PM Organizers: Elena I. Zavala (University of California, Berkeley and San Francisco State University), Ainash Childebayeva (Max Planck Institute for Evolutionary Anthropology, and University of Kansas), Laurits Skov (University of California, Berkeley) Location: Tuscany 1 This workshop will introduce both the laboratory and bioinformatic steps and considerations for ancient DNA analysis."

4
10
1,179
New team @SlicerMorph tees just arrived! 🤩
2
6
78
3,889
Chi Zhang retweeted
CBER Lab@UNCCBERLab2 Mar 2023
Pokémon, we choose you to hold our tubes! Thanks you @AtomicVirology for the files!
2
6
1
62
15,045
I'm very pleased to share our new paper introducing MEMOS, a @3DSlicerApp extension for deep learning-powered segmentation of fetal mice. Now available on @BiologyOpen!
This Post is from an account that no longer exists. Learn more
9
1
25
1,863
Chi Zhang retweeted
Fayn
@faynstudio6 Feb 2023
Two powerful earthquakes have struck in south-eastern Turkey, killing at least 1,800 people. This is how you can help the victims in Turkey and Syria.

9
643
85
647
529,351
Donating for Syrian earthquake refugees. Fundraising campaign for Syrian American Medical Society (SAMS) Foundation. It's an amazing organization. Find out more and donate here: igfn.us/vf/EarthquakeSyria /
2
2
290
Fund raising to help Türkiye Earthquake Relief Fund secure.givelively.org/donate…
81
Chi Zhang retweeted
AABA@BiologicalAnth31 Jan 2023
Are you ready for some #AABA2023 workshops??? First up: SlicerMorph: an open-source toolkit for 3D imaging and morphometric analysis. Wednesday, April 19, 1:00-5:00pm. Register here: bioanth.org/meetings-and-web…
The image is a description of the SlicerMorph workshop that is occurring on April 19 from 1-5 in Reno.

ALT The image is a description of the SlicerMorph workshop that is occurring on April 19 from 1-5 in Reno.

4
13
1,908
Join us for the @SlicerMorph office hour next week, 1/24 at 11am PT! @chi_polydata will be presenting #MALPACA, and update to #ALPACA supporting multi-templates. We'll also demo #TotalSegmentator, a new @3DSlicer extension for automated whole-body CT segmentation.
1
6
1
14
1,991
Load more