@biolib

The library of biological data science

 Copenhagen, Denmark
biolib.com
Joined May 2019
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Last week we had the chance to do an old-fashioned in-person team gathering in Boston 🌎 We joined the #DKBIO22, thanks to @ICDK_CPH for a great event and an occasion to catch up with other Nordic biotech start-ups and investors in the Boston ecosystem.
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Also got to soak up a bit of inspiration on the future of AI and biology 🧠🧬  Caught talks by @demishassabis at @MIT_CBMM on DeepMind’s work and @TheGregYang on hyperparameters transfer at the Models, Inference & Algorithms seminar at @broadinstitute .
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Foldseek is an awesome and super fast structural alignment tool by @thesteinegger @milot_mirdita and @SoedingL 🚀 Access to webserver or Python API 🐍:  biolib.com/Protein-Tools/fol…
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📒 Colab notebook tutorial on how to use the BioLib Foldseek Python API is available here: colab.research.google.com/dr…

Foldseek_demo.ipynb

Colaboratory notebook

colab.research.google.com
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Congratulations, @laurasansc 🎉 We are excited to have you join our team full time!
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ProteinSolver is a state-of-the-art Graph Convolutional Network model built by @ostrokach that takes 3D protein geometries and predicts new protein sequences. Try it out in our Python API or here: biolib.com/bio-utils/protein…

bio-utils/proteinsolver – BioLib

ProteinSolver ProteinSolver is a deep neural network which learns to solve (ill-defined) constraint satisfaction problems (CSPs) from training data. It has shown promising results both on a toy...

biolib.com
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Applications on BioLib can now show their output while they are running! 🎉 Check out an app that uses the new feature here: dtu.biolib.com/DeepTMHMM
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New times, new view 🌆. First week at the new BioLib satellite office in Cambridge, MA. @CICcambridge @biolib
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We just released a new feature called App Secrets that allows developers to specify passwords or API keys that will only become available to the app at runtime 🏃 You can find it under Application Settings 🔑
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#CutAdapt, the classic tool for removing adapter sequences from high-throughput sequencing reads, is now available through a public API and secure web-interface 🤓 biolib.com/bio-utils/cutadap… @marcelm_

bio-utils/cutadapt – BioLib

Cutadapt for paired-end reads Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. Cleaning your dat...

biolib.com
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Microsoft for Startups recently wrote about the hackathons BioLib and @CBioVikings have been running 🙌 startups.microsoft.com/en-us…
Read how hackathons and competitions helped life science #Startup @BioLib grow a global community and create an accessible data science library. msft.it/6012njM7g
Read how hackathons and competitions helped life science #Startup @BioLib grow a global community and create an accessible data science library. https://msft.it/6012njM7g

ALT Read how hackathons and competitions helped life science #Startup @BioLib grow a global community and create an accessible data science library. https://msft.it/6012njM7g

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In November, at a community gathering, the idea of a bioinformatics hackathon in Copenhagen came up. This weekend the first edition of the Copenhagen Bioinformatics Hackathon took place. biohackathon.dk #BioHackathon2020 #Bioinformatics
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Again, thanks to the mentors who brought projects and who passionately mentored and supported the teams. Thanks to the participants for joining and for their hard work on the challenges! This will not be the last edition of the Copenhagen Bioinformatics Hackathon. See you soon!
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💪🏼⚙️The mentors: @JungeAlexander @_amelie_rocks @j0kaso @apollohealthvc @larsjuhljensen @lassefolkersen @am_bjerregaard @vanessa_jurtz @JeppeHallgren
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Thanks all the mentors and participants (and many more, who didn't fit the screenshots!) for joining the #BioHackathon2020 ! You are breathtaking! See in the fall 2020 for the on-site event!
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Cph Bioinformatics Hackathon 2020 - Remote Edition 💻🔬 April 24th-26th 📆 Sign up now at biohackathon.dk #bioinformatics @CBioVikings
Copenhagen Bioinformatics Hackathon - Hack from Home Edition

ALT Copenhagen Bioinformatics Hackathon - Hack from Home Edition

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