@binarystate

@binarystate@mastodon.coffee Producer of research, software and odd sounds. Currently based at Rutherford Appleton Lab, Harwell. Opinions my own. (He/him)

 UK
phaseboundary.com
Joined May 2010
  • Tweets2.1K
  • Following438
  • Followers363
Replying to @binarystate @MolecularXtal @andrewwhite01
If you like your spheres to be shiny there is the povray option: > ase convert myfile.pdb myfile.pov > povray myfile.pov
Raytraced image of atomic spheres making ethanol molecule

ALT Raytraced image of atomic spheres making ethanol molecule

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Replying to @MolecularXtal @andrewwhite01
Indeed, from the command line it's just "ase convert myfile.pdb myfile.png" It doesn't do the fancy protein multiscale ribbon things, but for a simple atomistic picture of a molecule it works.
Demonstration of ASE conversion of PDB to image: > cat ethanol.pdb [content of PDB format structure file for ethanol molecule] > ase convert ethanol.pdb ethanol.png > xdg-open ethanol.png [popup window with simple drawing of ethanol molecule as coloured circles with black outlines]

ALT Demonstration of ASE conversion of PDB to image: > cat ethanol.pdb [content of PDB format structure file for ethanol molecule] > ase convert ethanol.pdb ethanol.png > xdg-open ethanol.png [popup window with simple drawing of ethanol molecule as coloured circles with black outlines]

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Very excited to be heading to the first UK ASE workshop, with an Open Science theme. I'm bringing stickers! (Big thanks to @cecamEvents @Psik_Network , CCP5, CCP9, ALC, PSDI, @UKRI_News ) 1/2
View from a train seat. The table is covered in sheets of clourful stickers. These are the logos for various atomistic modelling programs.

ALT View from a train seat. The table is covered in sheets of clourful stickers. These are the logos for various atomistic modelling programs.

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Lol, they're even blocking links to the coffee-drinkers instance. Not checking yet for handles in the Bio, though?
Twitter "edit profile" window; Website is set to https://mastodon.coffee/@binarystate but a pop-up says "Account update failed: Url is consider malware."

ALT Twitter "edit profile" window; Website is set to https://mastodon.coffee/@binarystate but a pop-up says "Account update failed: Url is consider malware."

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Replying to @GrumpyBadger5 @FlorenceHRScott
@GrumpyBadger5 @FlorenceHRScott
Gary Numan playing a black Les Paul electric guitar and frowning into the distance

ALT Gary Numan playing a black Les Paul electric guitar and frowning into the distance

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Replying to @scolar
I have a Minirig 3 battery-powered bluetooth speaker, which is not the cheapest but sounds good, has other uses and is running via a headphone interface in the "DIY support eurorack". I lie the idea of a sacrificial Bluetooth layer...
DIY electronics setup: a small speaker, oscilloscope showing digital signals, power supply and some pluggable breadboards with electronics.

ALT DIY electronics setup: a small speaker, oscilloscope showing digital signals, power supply and some pluggable breadboards with electronics.

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Rainy weekend project is lined up!
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Made some tweaks to the synth DIY station: Raspberry Pi Pico installed and powered! Figuring out audio will have to wait another day... annoyingly the audio library is pretty much undocumented and doesn't support my SPI DAC so may need to start from scratch.
Tabletop with electronics DIY equipment: three solderless breadboards, one with a few knobs and jacks, one with an amplifier chip and one with a Raspberry Pi Pico microcontroller installed. Behind are some Eurorack modules (which supply power, input signals and allow output signals to be listened to) and an oscilloscope for viewing voltages and waveforms.

ALT Tabletop with electronics DIY equipment: three solderless breadboards, one with a few knobs and jacks, one with an amplifier chip and one with a Raspberry Pi Pico microcontroller installed. Behind are some Eurorack modules (which supply power, input signals and allow output signals to be listened to) and an oscilloscope for viewing voltages and waveforms.

Replying to @binarystate @synthracks
At the bottom right are some cable glands; these support multi-core cables that run to a patchbay/interface, and connect to a DIY active breakout panel. This avoids trailing cables at the front, and/or chunkier interface modules eating up rack space.
A DIY synthesiser module consisting of a narrow black panel covering a deep hand-soldered circuit board with electronic components. Cables run from glands in the case to wide 12-pin connectors at the back of the circuit board. When installed, all of this is hidden, and the user will only see a narrow black panel with 8 jack sockets.

ALT A DIY synthesiser module consisting of a narrow black panel covering a deep hand-soldered circuit board with electronic components. Cables run from glands in the case to wide 12-pin connectors at the back of the circuit board. When installed, all of this is hidden, and the user will only see a narrow black panel with 8 jack sockets.

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