@bercowskya
 Zug, Switzerland
Joined January 2018
  • Tweets138
  • Following160
  • Followers190
10Media
📊🔬 Wonderful discussions yesterday around data management in #imaging at our joint event with @bitsinbio Lausanne! A big thank you to @joel_luethi, @bercowskya, and Rémy Dornier for sharing their expertise and insights, and to @ThomVett for making it happen so smoothly! 🙌
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Happy to team up with @bitsinbio Lausanne for an exciting industry-academia discussion on Big Data Management for #Imaging 💻🔬 Join us at @EPFL_en next Wed Jan 24 at 18:00! With talks from @joel_luethi at @UZH_en, @bercowskya at @dotphoton, and Edward Andò at @EPFL_Imaging.
Bits in Bio@bitsinbio17 Jan 2024
Lausanne! Our next event is coming up soon, thanks to @EPFL_Imaging 🗓 Tues 24th Jan 🕕 18:00 - 20:00 📍SV 1717, Bâtiment SV, EPFL RSVP link below
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Our paper is finally out! 🥳
oaties@OatesLab7 Jun 2023
But, what are the cells doing? Our step by step guide to following single cells in vivo is now out (in collaboration with @nKiaru) 🔬
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Packed room for today's #ImagingLunch! 😌🥗 A nice opportunity for our @EPFL_en attendees to learn how to accelerate large-scale image processing in Python. Many thanks to our in-house expert @JoanRueQ for the very clear talk 👏
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📢 Today we OPEN the CALL for the #MMRES, the Master from @_BIST 👣 Join us at the Master in Multidisciplinary Research in Experimental Sciences ▶️ Have a look at @bercowskya's testimonial! youtu.be/o1Fye9FgdS0

MMRES alumni testimonial - Arianne Bercowsky, MMRES Class 2017-2018

The Master of Multidisciplinary Research in Experimental Sciences (...

youtube.com
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Arianne Bercowsky retweeted
Robert Haase@haesleinhuepf22 Nov 2022
#CBIAS2022 Panel discussion; panelist perspective @The_CBIAS
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Arianne Bercowsky retweeted
Kota Miura@cmci_30 Sep 2022
#NEUBIAS textbook 2022 is now (finally...) online! link.springer.com/book/10.10… #BioimageAnalysis enjoy....
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Tim-Oliver Buchholz@tibuch_14 Jul 2022
This afternoon @bercowskya teaches us how to load, handle and plot tabular data with #pandas and #bokeh. #ZIDAS2022
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It is day four of #ZIDAS2022 and that means Modern Software Practices (Github, Python, Jupyter, #ZeroCostDL4Mic, ...). By @olivier_debora @tibuch_ @bercowskya @nKiaru @joel_luethi #BioImageAnalysis 2022.zidas.org/
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Arianne Bercowsky retweeted
EPFL BIOP@LeBIOP2 May 2022
Application Deadline Extended: Sunday May 8th 2022 We're extending the deadline for #ZIDAS2022. So if you hadn't gotten a reply from your supervisor in time, there is still a chance to Apply and join us in Lausanne for an intense week of image analysis! 2022.zidas.org/

ZIDAS 2022

This one-week school provides a hands-on introduction to image processing and analysis, with an emphasis on biologically relevant examples.

2022.zidas.org
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oaties@OatesLab27 Apr 2022
The final version of our manuscript, where we investigate emergence of left-right symmetric somites in #zebrafish embryos is now out! nature.com/articles/s41586-0… @Sundar_Ram_07 @mpopov1c @AOates1 @EPFL_en @epflSV
oaties@OatesLab15 Aug 2020
Is left-right #symmetry a default state in somites? Excited to share our latest #preprint that counters the textbook view @Sundar_Ram_07 @mpopov1c @AOates1 biorxiv.org/content/10.1101/…

Somite deformations buffer imprecise segment lengths to ensure left-right symmetry

The body axis of vertebrate embryos is periodically segmented into bilaterally symmetric pairs of somites. The anteroposterior length and boundary position of somites are thought to be molecularly...

biorxiv.org
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Arianne Bercowsky retweeted
Trivedi Lab@LabTrivedi15 Feb 2022
We are thrilled to present our first collaboration with the @jgojalvo lab. We developed a new method based on Bayesian inference to deconvolve noise from flow cytometry data. @UPFbiomed @EMBLBarcelona @embl arxiv.org/abs/2202.06325

Single-cell Bayesian deconvolution

Individual cells exhibit substantial heterogeneity in protein abundance and activity, which is frequently reflected in broad distributions of fluorescently labeled reporters. Since all cellular...

arxiv.org
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Fantastic work by Dr. Pol del Aguila Pla @polsocjo from @big_epfl @CIBM_ch in driving the development of interactive #Jupyter Notebooks that help @EPFL_en students to better understand the concepts behind some key image-processing algorithms 👏 epfl.ch/education/educationa…
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Arianne Bercowsky retweeted
EPFL@EPFL_en15 Sep 2021
To give EPFL scientists advice on employing #algorithms and #machinelearning, @DanielSage_ from @EPFL_Imaging holds regular "Image Analysis Breakfasts", bringing together researchers from all disciplines. actu.epfl.ch/news/used-incor…

"Used incorrectly, algorithms and AI can waste time"

Algorithms and machine learning let scientists compare and analyze images quickly and precisely, but using them often requires advanced skills in programming. To give EPFL scientists advice on...

actu.epfl.ch
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New publication from @OatesLab using our #lightsheet microscope is online! We enjoyed working with Arianne @bercowskya on the automated object tracking.
oaties@OatesLab31 May 2021
Replying to @OatesLab
We followed clock oscillations at single-cell resolution throughout somitogenesis. We used @ViventisMicro LS1 Live #lightsheet microscope to image cells in vivo. To always keep the tissue of interest in the field of view we used online tracking during acquisition.
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Arianne Bercowsky retweeted
Jose Negrete Jr@JoseNegreteJr331 May 2021
Check our latest work on the genetic timers in the zebrafish segmentation clock @l_roh_ch @bercowskya @OatesLab
oaties@OatesLab31 May 2021
"But, what are the cells doing?" ... Have a look at our new pre-print. 💚 biorxiv.org/content/10.1101/…

Cell-autonomous generation of the wave pattern within the vertebrate segmentation clock

Sequential segmentation of the body axis is fundamental to vertebrate embryonic patterning. This relies on the segmentation clock, a multi-cellular oscillating genetic-network, which mainifests as...

biorxiv.org
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Arianne Bercowsky retweeted
oaties@OatesLab31 May 2021
"But, what are the cells doing?" ... Have a look at our new pre-print. 💚 biorxiv.org/content/10.1101/…

Cell-autonomous generation of the wave pattern within the vertebrate segmentation clock

Sequential segmentation of the body axis is fundamental to vertebrate embryonic patterning. This relies on the segmentation clock, a multi-cellular oscillating genetic-network, which mainifests as...

biorxiv.org
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Arianne Bercowsky retweeted
oaties@OatesLab29 May 2021
We 💚 Viventis @ViventisMicro , Mastodon @jytinevez @pietzscht and Paleontologist @bercowskya
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